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Detecting remotely related proteins by their interactions and sequence similarity.
Espadaler J, Aragüés R, Eswar N, Marti-Renom MA, Querol E, Avilés FX, Sali A, Oliva B. Espadaler J, et al. Among authors: sali a. Proc Natl Acad Sci U S A. 2005 May 17;102(20):7151-6. doi: 10.1073/pnas.0500831102. Epub 2005 May 9. Proc Natl Acad Sci U S A. 2005. PMID: 15883372 Free PMC article.
Alignment of protein sequences by their profiles.
Marti-Renom MA, Madhusudhan MS, Sali A. Marti-Renom MA, et al. Among authors: sali a. Protein Sci. 2004 Apr;13(4):1071-87. doi: 10.1110/ps.03379804. Protein Sci. 2004. PMID: 15044736 Free PMC article.
Variable gap penalty for protein sequence-structure alignment.
Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A. Madhusudhan MS, et al. Among authors: sali a. Protein Eng Des Sel. 2006 Mar;19(3):129-33. doi: 10.1093/protein/gzj005. Epub 2006 Jan 19. Protein Eng Des Sel. 2006. PMID: 16423846
DBAli tools: mining the protein structure space.
Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A. Marti-Renom MA, et al. Among authors: sali a. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. doi: 10.1093/nar/gkm236. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478513 Free PMC article.
Comparative protein structure modeling using Modeller.
Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, Shen MY, Pieper U, Sali A. Eswar N, et al. Among authors: sali a. Curr Protoc Bioinformatics. 2006 Oct;Chapter 5:Unit-5.6. doi: 10.1002/0471250953.bi0506s15. Curr Protoc Bioinformatics. 2006. PMID: 18428767 Free PMC article.
633 results