Salzberg SL - Search Results

1

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.

Pertea M, Shumate A, Pertea G, Varabyou A, Breitwieser FP, Chang YC, Madugundu AK, Pandey A, Salzberg SL. Pertea M, et al. Among authors: salzberg sl. Genome Biol. 2018 Nov 28;19(1):208. doi: 10.1186/s13059-018-1590-2. Genome Biol. 2018. PMID: 30486838 Free PMC article.

2

Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum.

Gardner MJ, Tettelin H, Carucci DJ, Cummings LM, Aravind L, Koonin EV, Shallom S, Mason T, Yu K, Fujii C, Pederson J, Shen K, Jing J, Aston C, Lai Z, Schwartz DC, Pertea M, Salzberg S, Zhou L, Sutton GG, Clayton R, White O, Smith HO, Fraser CM, Adams MD, Venter JC, Hoffman SL. Gardner MJ, et al. Among authors: salzberg s. Science. 1998 Nov 6;282(5391):1126-32. doi: 10.1126/science.282.5391.1126. Science. 1998. PMID: 9804551

3

Interpolated Markov models for eukaryotic gene finding.

Salzberg SL, Pertea M, Delcher AL, Gardner MJ, Tettelin H. Salzberg SL, et al. Genomics. 1999 Jul 1;59(1):24-31. doi: 10.1006/geno.1999.5854. Genomics. 1999. PMID: 10395796 Free article.

4

Gene index analysis of the human genome estimates approximately 120,000 genes.

Liang F, Holt I, Pertea G, Karamycheva S, Salzberg SL, Quackenbush J. Liang F, et al. Among authors: salzberg sl. Nat Genet. 2000 Jun;25(2):239-40. doi: 10.1038/76126. Nat Genet. 2000. PMID: 10835646

5

An optimized protocol for analysis of EST sequences.

Liang F, Holt I, Pertea G, Karamycheva S, Salzberg SL, Quackenbush J. Liang F, et al. Among authors: salzberg sl. Nucleic Acids Res. 2000 Sep 15;28(18):3657-65. doi: 10.1093/nar/28.18.3657. Nucleic Acids Res. 2000. PMID: 10982889 Free PMC article.

6

GeneSplicer: a new computational method for splice site prediction.

Pertea M, Lin X, Salzberg SL. Pertea M, et al. Among authors: salzberg sl. Nucleic Acids Res. 2001 Mar 1;29(5):1185-90. doi: 10.1093/nar/29.5.1185. Nucleic Acids Res. 2001. PMID: 11222768 Free PMC article.

7

Computational gene finding in plants.

Pertea M, Salzberg SL. Pertea M, et al. Among authors: salzberg sl. Plant Mol Biol. 2002 Jan;48(1-2):39-48. Plant Mol Biol. 2002. PMID: 11860211 Review.

8

Full-length messenger RNA sequences greatly improve genome annotation.

Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL. Haas BJ, et al. Among authors: salzberg sl. Genome Biol. 2002;3(6):RESEARCH0029. doi: 10.1186/gb-2002-3-6-research0029. Epub 2002 May 30. Genome Biol. 2002. PMID: 12093376 Free PMC article.

9

GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders.

Majoros WH, Pertea M, Antonescu C, Salzberg SL. Majoros WH, et al. Among authors: salzberg sl. Nucleic Acids Res. 2003 Jul 1;31(13):3601-4. doi: 10.1093/nar/gkg527. Nucleic Acids Res. 2003. PMID: 12824375 Free PMC article.

10

Computational gene prediction using multiple sources of evidence.

Allen JE, Pertea M, Salzberg SL. Allen JE, et al. Among authors: salzberg sl. Genome Res. 2004 Jan;14(1):142-8. doi: 10.1101/gr.1562804. Genome Res. 2004. PMID: 14707176 Free PMC article.

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