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Decrypting drug actions and protein modifications by dose- and time-resolved proteomics.
Zecha J, Bayer FP, Wiechmann S, Woortman J, Berner N, Müller J, Schneider A, Kramer K, Abril-Gil M, Hopf T, Reichart L, Chen L, Hansen FM, Lechner S, Samaras P, Eckert S, Lautenbacher L, Reinecke M, Hamood F, Prokofeva P, Vornholz L, Falcomatà C, Dorsch M, Schröder A, Venhuizen A, Wilhelm S, Médard G, Stoehr G, Ruland J, Grüner BM, Saur D, Buchner M, Ruprecht B, Hahne H, The M, Wilhelm M, Kuster B. Zecha J, et al. Among authors: samaras p. Science. 2023 Apr 7;380(6640):93-101. doi: 10.1126/science.ade3925. Epub 2023 Mar 16. Science. 2023. PMID: 36926954 Free PMC article.
Pattern discovery for microsatellite genome analysis.
Kavakiotis I, Triantafyllidis A, Samaras P, Voulgaridis A, Karaiskou N, Konstantinidis E, Vlahavas I. Kavakiotis I, et al. Among authors: samaras p. Comput Biol Med. 2014 Mar;46:71-8. doi: 10.1016/j.compbiomed.2014.01.002. Epub 2014 Jan 15. Comput Biol Med. 2014. PMID: 24529207
ProteomicsDB.
Schmidt T, Samaras P, Frejno M, Gessulat S, Barnert M, Kienegger H, Krcmar H, Schlegl J, Ehrlich HC, Aiche S, Kuster B, Wilhelm M. Schmidt T, et al. Among authors: samaras p. Nucleic Acids Res. 2018 Jan 4;46(D1):D1271-D1281. doi: 10.1093/nar/gkx1029. Nucleic Acids Res. 2018. PMID: 29106664 Free PMC article.
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.
Gessulat S, Schmidt T, Zolg DP, Samaras P, Schnatbaum K, Zerweck J, Knaute T, Rechenberger J, Delanghe B, Huhmer A, Reimer U, Ehrlich HC, Aiche S, Kuster B, Wilhelm M. Gessulat S, et al. Among authors: samaras p. Nat Methods. 2019 Jun;16(6):509-518. doi: 10.1038/s41592-019-0426-7. Epub 2019 May 27. Nat Methods. 2019. PMID: 31133760
ProteomicsDB: a multi-omics and multi-organism resource for life science research.
Samaras P, Schmidt T, Frejno M, Gessulat S, Reinecke M, Jarzab A, Zecha J, Mergner J, Giansanti P, Ehrlich HC, Aiche S, Rank J, Kienegger H, Krcmar H, Kuster B, Wilhelm M. Samaras P, et al. Nucleic Acids Res. 2020 Jan 8;48(D1):D1153-D1163. doi: 10.1093/nar/gkz974. Nucleic Acids Res. 2020. PMID: 31665479 Free PMC article.
Meltome atlas-thermal proteome stability across the tree of life.
Jarzab A, Kurzawa N, Hopf T, Moerch M, Zecha J, Leijten N, Bian Y, Musiol E, Maschberger M, Stoehr G, Becher I, Daly C, Samaras P, Mergner J, Spanier B, Angelov A, Werner T, Bantscheff M, Wilhelm M, Klingenspor M, Lemeer S, Liebl W, Hahne H, Savitski MM, Kuster B. Jarzab A, et al. Among authors: samaras p. Nat Methods. 2020 May;17(5):495-503. doi: 10.1038/s41592-020-0801-4. Epub 2020 Apr 13. Nat Methods. 2020. PMID: 32284610
Proteome activity landscapes of tumor cell lines determine drug responses.
Frejno M, Meng C, Ruprecht B, Oellerich T, Scheich S, Kleigrewe K, Drecoll E, Samaras P, Hogrebe A, Helm D, Mergner J, Zecha J, Heinzlmeir S, Wilhelm M, Dorn J, Kvasnicka HM, Serve H, Weichert W, Kuster B. Frejno M, et al. Among authors: samaras p. Nat Commun. 2020 Jul 20;11(1):3639. doi: 10.1038/s41467-020-17336-9. Nat Commun. 2020. PMID: 32686665 Free PMC article.
137 results