Saxonov S - Search Results

1

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters.

Saxonov S, Berg P, Brutlag DL. Saxonov S, et al. Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1412-7. doi: 10.1073/pnas.0510310103. Epub 2006 Jan 23. Proc Natl Acad Sci U S A. 2006. PMID: 16432200 Free PMC article.

2

eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity.

Su QJ, Lu L, Saxonov S, Brutlag DL. Su QJ, et al. Among authors: saxonov s. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D178-82. doi: 10.1093/nar/gki060. Nucleic Acids Res. 2005. PMID: 15608172 Free PMC article.

3

Intron distribution difference for 276 ancient and 131 modern genes suggests the existence of ancient introns.

Fedorov A, Cao X, Saxonov S, de Souza SJ, Roy SW, Gilbert W. Fedorov A, et al. Among authors: saxonov s. Proc Natl Acad Sci U S A. 2001 Nov 6;98(23):13177-82. doi: 10.1073/pnas.231491498. Epub 2001 Oct 30. Proc Natl Acad Sci U S A. 2001. PMID: 11687643 Free PMC article.

4

The universe of exons revisited.

Saxonov S, Gilbert W. Saxonov S, et al. Genetica. 2003 Jul;118(2-3):267-78. Genetica. 2003. PMID: 12868615

5

EID: the Exon-Intron Database-an exhaustive database of protein-coding intron-containing genes.

Saxonov S, Daizadeh I, Fedorov A, Gilbert W. Saxonov S, et al. Nucleic Acids Res. 2000 Jan 1;28(1):185-90. doi: 10.1093/nar/28.1.185. Nucleic Acids Res. 2000. PMID: 10592221 Free PMC article.

6

Regularities of context-dependent codon bias in eukaryotic genes.

Fedorov A, Saxonov S, Gilbert W. Fedorov A, et al. Among authors: saxonov s. Nucleic Acids Res. 2002 Mar 1;30(5):1192-7. doi: 10.1093/nar/30.5.1192. Nucleic Acids Res. 2002. PMID: 11861911 Free PMC article.

7

Comparison of intron-containing and intron-lacking human genes elucidates putative exonic splicing enhancers.

Fedorov A, Saxonov S, Fedorova L, Daizadeh I. Fedorov A, et al. Among authors: saxonov s. Nucleic Acids Res. 2001 Apr 1;29(7):1464-9. doi: 10.1093/nar/29.7.1464. Nucleic Acids Res. 2001. PMID: 11266547 Free PMC article.

8

Quantitative and Sensitive Detection of Cancer Genome Amplifications from Formalin Fixed Paraffin Embedded Tumors with Droplet Digital PCR.

Nadauld L, Regan JF, Miotke L, Pai RK, Longacre TA, Kwok SS, Saxonov S, Ford JM, Ji HP. Nadauld L, et al. Among authors: saxonov s. Transl Med (Sunnyvale). 2012;2(2):1000107. doi: 10.4172/2161-1025.1000107. Transl Med (Sunnyvale). 2012. PMID: 23682346 Free PMC article.

9

High-throughput droplet digital PCR system for absolute quantitation of DNA copy number.

Hindson BJ, Ness KD, Masquelier DA, Belgrader P, Heredia NJ, Makarewicz AJ, Bright IJ, Lucero MY, Hiddessen AL, Legler TC, Kitano TK, Hodel MR, Petersen JF, Wyatt PW, Steenblock ER, Shah PH, Bousse LJ, Troup CB, Mellen JC, Wittmann DK, Erndt NG, Cauley TH, Koehler RT, So AP, Dube S, Rose KA, Montesclaros L, Wang S, Stumbo DP, Hodges SP, Romine S, Milanovich FP, White HE, Regan JF, Karlin-Neumann GA, Hindson CM, Saxonov S, Colston BW. Hindson BJ, et al. Among authors: saxonov s. Anal Chem. 2011 Nov 15;83(22):8604-10. doi: 10.1021/ac202028g. Epub 2011 Oct 28. Anal Chem. 2011. PMID: 22035192 Free PMC article.

10

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.

Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, Kyriazopoulou-Panagiotopoulou S, Masquelier DA, Merrill L, Terry JM, Mudivarti PA, Wyatt PW, Bharadwaj R, Makarewicz AJ, Li Y, Belgrader P, Price AD, Lowe AJ, Marks P, Vurens GM, Hardenbol P, Montesclaros L, Luo M, Greenfield L, Wong A, Birch DE, Short SW, Bjornson KP, Patel P, Hopmans ES, Wood C, Kaur S, Lockwood GK, Stafford D, Delaney JP, Wu I, Ordonez HS, Grimes SM, Greer S, Lee JY, Belhocine K, Giorda KM, Heaton WH, McDermott GP, Bent ZW, Meschi F, Kondov NO, Wilson R, Bernate JA, Gauby S, Kindwall A, Bermejo C, Fehr AN, Chan A, Saxonov S, Ness KD, Hindson BJ, Ji HP. Zheng GX, et al. Among authors: saxonov s. Nat Biotechnol. 2016 Mar;34(3):303-11. doi: 10.1038/nbt.3432. Epub 2016 Feb 1. Nat Biotechnol. 2016. PMID: 26829319 Free PMC article.

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