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ViPR: an open bioinformatics database and analysis resource for virology research.
Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, Liu M, Kumar S, Zaremba S, Gu Z, Zhou L, Larson CN, Dietrich J, Klem EB, Scheuermann RH. Pickett BE, et al. Among authors: scheuermann rh. Nucleic Acids Res. 2012 Jan;40(Database issue):D593-8. doi: 10.1093/nar/gkr859. Epub 2011 Oct 17. Nucleic Acids Res. 2012. PMID: 22006842 Free PMC article.
Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00.
Barabote RD, Xie G, Brettin TS, Hinrichs SH, Fey PD, Jay JJ, Engle JL, Godbole SD, Noronha JM, Scheuermann RH, Zhou LW, Lion C, Dempsey MP. Barabote RD, et al. Among authors: scheuermann rh. PLoS One. 2009 Sep 16;4(9):e7041. doi: 10.1371/journal.pone.0007041. PLoS One. 2009. PMID: 19756146 Free PMC article.
Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data.
Qian Y, Wei C, Eun-Hyung Lee F, Campbell J, Halliley J, Lee JA, Cai J, Kong YM, Sadat E, Thomson E, Dunn P, Seegmiller AC, Karandikar NJ, Tipton CM, Mosmann T, Sanz I, Scheuermann RH. Qian Y, et al. Among authors: scheuermann rh. Cytometry B Clin Cytom. 2010;78 Suppl 1(Suppl 1):S69-82. doi: 10.1002/cyto.b.20554. Cytometry B Clin Cytom. 2010. PMID: 20839340 Free PMC article.
Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.
Squires RB, Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, Klem E, Scheuermann RH. Squires RB, et al. Among authors: scheuermann rh. Influenza Other Respir Viruses. 2012 Nov;6(6):404-16. doi: 10.1111/j.1750-2659.2011.00331.x. Epub 2012 Jan 20. Influenza Other Respir Viruses. 2012. PMID: 22260278 Free PMC article.
Influenza virus sequence feature variant type analysis: evidence of a role for NS1 in influenza virus host range restriction.
Noronha JM, Liu M, Squires RB, Pickett BE, Hale BG, Air GM, Galloway SE, Takimoto T, Schmolke M, Hunt V, Klem E, García-Sastre A, McGee M, Scheuermann RH. Noronha JM, et al. Among authors: scheuermann rh. J Virol. 2012 May;86(10):5857-66. doi: 10.1128/JVI.06901-11. Epub 2012 Mar 7. J Virol. 2012. PMID: 22398283 Free PMC article.
Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes.
Pickett BE, Liu M, Sadat EL, Squires RB, Noronha JM, He S, Jen W, Zaremba S, Gu Z, Zhou L, Larsen CN, Bosch I, Gehrke L, McGee M, Klem EB, Scheuermann RH. Pickett BE, et al. Among authors: scheuermann rh. Virology. 2013 Dec;447(1-2):45-51. doi: 10.1016/j.virol.2013.08.021. Epub 2013 Sep 14. Virology. 2013. PMID: 24210098 Free PMC article.
Standardized metadata for human pathogen/vector genomic sequences.
Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH. Dugan VG, et al. Among authors: scheuermann rh. PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014. PLoS One. 2014. PMID: 24936976 Free PMC article.
203 results