Schneider G - Search Results

1

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.

Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S. Tan J, et al. Among authors: schneider g. Bioinformatics. 2012 Jun 15;28(12):1645-6. doi: 10.1093/bioinformatics/bts197. Epub 2012 Apr 23. Bioinformatics. 2012. PMID: 22531216 Free PMC article.

2

ANNIE: integrated de novo protein sequence annotation.

Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G. Ooi HS, et al. Among authors: schneider g. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W435-40. doi: 10.1093/nar/gkp254. Epub 2009 Apr 23. Nucleic Acids Res. 2009. PMID: 19389726 Free PMC article.

3

Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset.

Sirota FL, Ooi HS, Gattermayer T, Schneider G, Eisenhaber F, Maurer-Stroh S. Sirota FL, et al. Among authors: schneider g. BMC Genomics. 2010 Feb 10;11 Suppl 1(Suppl 1):S15. doi: 10.1186/1471-2164-11-S1-S15. BMC Genomics. 2010. PMID: 20158872 Free PMC article.

4

Integrated tools for biomolecular sequence-based function prediction as exemplified by the ANNOTATOR software environment.

Schneider G, Wildpaner M, Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Schneider G, et al. Methods Mol Biol. 2010;609:257-67. doi: 10.1007/978-1-60327-241-4_15. Methods Mol Biol. 2010. PMID: 20221924

5

Transmembrane helix: simple or complex.

Wong WC, Maurer-Stroh S, Schneider G, Eisenhaber F. Wong WC, et al. Among authors: schneider g. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W370-5. doi: 10.1093/nar/gks379. Epub 2012 May 7. Nucleic Acids Res. 2012. PMID: 22564899 Free PMC article.

6

Beware of moving targets: reference proteome content fluctuates substantially over the years.

Sirota FL, Batagov A, Schneider G, Eisenhaber B, Eisenhaber F, Maurer-Stroh S. Sirota FL, et al. Among authors: schneider g. J Bioinform Comput Biol. 2012 Dec;10(6):1250020. doi: 10.1142/S0219720012500205. Epub 2012 Aug 7. J Bioinform Comput Biol. 2012. PMID: 22867629

7

Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently "orphan" viral proteins.

Kuchibhatla DB, Sherman WA, Chung BY, Cook S, Schneider G, Eisenhaber B, Karlin DG. Kuchibhatla DB, et al. Among authors: schneider g. J Virol. 2014 Jan;88(1):10-20. doi: 10.1128/JVI.02595-13. Epub 2013 Oct 23. J Virol. 2014. PMID: 24155369 Free PMC article.

8

Databases of protein-protein interactions and complexes.

Ooi HS, Schneider G, Chan YL, Lim TT, Eisenhaber B, Eisenhaber F. Ooi HS, et al. Among authors: schneider g. Methods Mol Biol. 2010;609:145-59. doi: 10.1007/978-1-60327-241-4_9. Methods Mol Biol. 2010. PMID: 20221918 Review.

9

Taxonomy workbench.

Wildpaner M, Schneider G, Schleiffer A, Eisenhaber F. Wildpaner M, et al. Among authors: schneider g. Bioinformatics. 2001 Dec;17(12):1179-82. doi: 10.1093/bioinformatics/17.12.1179. Bioinformatics. 2001. PMID: 11751226

10

Biomolecular pathway databases.

Ooi HS, Schneider G, Lim TT, Chan YL, Eisenhaber B, Eisenhaber F. Ooi HS, et al. Among authors: schneider g. Methods Mol Biol. 2010;609:129-44. doi: 10.1007/978-1-60327-241-4_8. Methods Mol Biol. 2010. PMID: 20221917 Review.

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