Shepherd DP - Search Results

1

Distribution shapes govern the discovery of predictive models for gene regulation.

Munsky B, Li G, Fox ZR, Shepherd DP, Neuert G. Munsky B, et al. Among authors: shepherd dp. Proc Natl Acad Sci U S A. 2018 Jul 17;115(29):7533-7538. doi: 10.1073/pnas.1804060115. Epub 2018 Jun 29. Proc Natl Acad Sci U S A. 2018. PMID: 29959206 Free PMC article.

2

Counting small RNA in pathogenic bacteria.

Shepherd DP, Li N, Micheva-Viteva SN, Munsky B, Hong-Geller E, Werner JH. Shepherd DP, et al. Anal Chem. 2013 May 21;85(10):4938-43. doi: 10.1021/ac303792p. Epub 2013 Apr 25. Anal Chem. 2013. PMID: 23577771

3

A Structured Illumination Microscopy Framework with Spatial-Domain Noise Propagation.

Saurabh A, Brown PT, Bryan JS 4th, Fox ZR, Kruithoff R, Thompson C, Kural C, Shepherd DP, Pressé S. Saurabh A, et al. Among authors: shepherd dp. bioRxiv [Preprint]. 2024 Mar 6:2023.12.07.570701. doi: 10.1101/2023.12.07.570701. bioRxiv. 2024. PMID: 38106139 Free PMC article. Preprint.

4

Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations.

Djutanta F, Brown PT, Nainggolan B, Coullomb A, Radhakrishnan S, Sentosa J, Yurke B, Hariadi RF, Shepherd DP. Djutanta F, et al. Among authors: shepherd dp. Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2220033120. doi: 10.1073/pnas.2220033120. Epub 2023 May 26. Proc Natl Acad Sci U S A. 2023. PMID: 37235635 Free PMC article.

5

Automatic and adaptive heterogeneous refractive index compensation for light-sheet microscopy.

Ryan DP, Gould EA, Seedorf GJ, Masihzadeh O, Abman SH, Vijayaraghavan S, Macklin WB, Restrepo D, Shepherd DP. Ryan DP, et al. Among authors: shepherd dp. Nat Commun. 2017 Sep 20;8(1):612. doi: 10.1038/s41467-017-00514-7. Nat Commun. 2017. PMID: 28931809 Free PMC article.

6

Heterogeneous response of endothelial cells to insulin-like growth factor 1 treatment is explained by spatially clustered sub-populations.

Kim C, Seedorf GJ, Abman SH, Shepherd DP. Kim C, et al. Among authors: shepherd dp. Biol Open. 2019 Nov 4;8(11):bio045906. doi: 10.1242/bio.045906. Biol Open. 2019. PMID: 31649121 Free PMC article.

7

Quantifying three-dimensional rodent retina vascular development using optical tissue clearing and light-sheet microscopy.

Singh JN, Nowlin TM, Seedorf GJ, Abman SH, Shepherd DP. Singh JN, et al. Among authors: shepherd dp. J Biomed Opt. 2017 Jul 1;22(7):76011. doi: 10.1117/1.JBO.22.7.076011. J Biomed Opt. 2017. PMID: 28717817 Free PMC article.

8

Mild myelin disruption elicits early alteration in behavior and proliferation in the subventricular zone.

Gould EA, Busquet N, Shepherd D, Dietz RM, Herson PS, Simoes de Souza FM, Li A, George NM, Restrepo D, Macklin WB. Gould EA, et al. Elife. 2018 Feb 13;7:e34783. doi: 10.7554/eLife.34783. Elife. 2018. PMID: 29436368 Free PMC article.

9

rhIGF-1/BP3 Preserves Lung Growth and Prevents Pulmonary Hypertension in Experimental Bronchopulmonary Dysplasia.

Seedorf G, Kim C, Wallace B, Mandell EW, Nowlin T, Shepherd D, Abman SH. Seedorf G, et al. Am J Respir Crit Care Med. 2020 May 1;201(9):1120-1134. doi: 10.1164/rccm.201910-1975OC. Am J Respir Crit Care Med. 2020. PMID: 32101461 Free PMC article.

10

Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning.

Supekar OD, Sias A, Hansen SR, Martinez G, Peet GC, Peng X, Bright VM, Hughes EG, Restrepo D, Shepherd DP, Welle CG, Gopinath JT, Gibson EA. Supekar OD, et al. Among authors: shepherd dp. Biomed Opt Express. 2022 Mar 29;13(4):2530-2541. doi: 10.1364/BOE.449533. eCollection 2022 Apr 1. Biomed Opt Express. 2022. PMID: 35519247 Free PMC article.

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