Simpson GG - Search Results

1

Staiger D, Simpson GG. Staiger D, et al. Among authors: simpson gg. Genome Biol. 2015 Jul 7;16(1):136. doi: 10.1186/s13059-015-0704-3. Genome Biol. 2015. PMID: 26149172 Free PMC article.

2

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing.

Parker MT, Knop K, Barton GJ, Simpson GG. Parker MT, et al. Among authors: simpson gg. Genome Biol. 2021 Mar 1;22(1):72. doi: 10.1186/s13059-021-02296-0. Genome Biol. 2021. PMID: 33648554 Free PMC article.

3

Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.

Duc C, Sherstnev A, Cole C, Barton GJ, Simpson GG. Duc C, et al. Among authors: simpson gg. PLoS Genet. 2013 Oct;9(10):e1003867. doi: 10.1371/journal.pgen.1003867. Epub 2013 Oct 31. PLoS Genet. 2013. PMID: 24204292 Free PMC article.

4

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m⁶A modification.

Parker MT, Knop K, Sherwood AV, Schurch NJ, Mackinnon K, Gould PD, Hall AJ, Barton GJ, Simpson GG. Parker MT, et al. Among authors: simpson gg. Elife. 2020 Jan 14;9:e49658. doi: 10.7554/eLife.49658. Elife. 2020. PMID: 31931956 Free PMC article.

5

The Arabidopsis epitranscriptome.

Fray RG, Simpson GG. Fray RG, et al. Among authors: simpson gg. Curr Opin Plant Biol. 2015 Oct;27:17-21. doi: 10.1016/j.pbi.2015.05.015. Epub 2015 Jun 3. Curr Opin Plant Biol. 2015. PMID: 26048078 Free article. Review.

6

NO flowering.

Simpson GG. Simpson GG. Bioessays. 2005 Mar;27(3):239-41. doi: 10.1002/bies.20201. Bioessays. 2005. PMID: 15714562 Review.

7

Regulation of flowering time by RNA processing.

Terzi LC, Simpson GG. Terzi LC, et al. Among authors: simpson gg. Curr Top Microbiol Immunol. 2008;326:201-18. doi: 10.1007/978-3-540-76776-3_11. Curr Top Microbiol Immunol. 2008. PMID: 18630754 Review.

8

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG. Sherstnev A, et al. Among authors: simpson gg. Nat Struct Mol Biol. 2012 Aug;19(8):845-52. doi: 10.1038/nsmb.2345. Epub 2012 Jul 22. Nat Struct Mol Biol. 2012. PMID: 22820990 Free PMC article.

9

Relative Abundance of Transcripts ( RATs): Identifying differential isoform abundance from RNA-seq.

Froussios K, Mourão K, Simpson G, Barton G, Schurch N. Froussios K, et al. F1000Res. 2019 Feb 24;8:213. doi: 10.12688/f1000research.17916.1. eCollection 2019. F1000Res. 2019. PMID: 30906538 Free PMC article.

10

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA.

Parker MT, Knop K, Zacharaki V, Sherwood AV, Tomé D, Yu X, Martin PG, Beynon J, Michaels SD, Barton GJ, Simpson GG. Parker MT, et al. Among authors: simpson gg. Elife. 2021 Apr 27;10:e65537. doi: 10.7554/eLife.65537. Elife. 2021. PMID: 33904405 Free PMC article.

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