Sims PA - Search Results

1

Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease.

Szabo PA, Levitin HM, Miron M, Snyder ME, Senda T, Yuan J, Cheng YL, Bush EC, Dogra P, Thapa P, Farber DL, Sims PA. Szabo PA, et al. Among authors: sims pa. Nat Commun. 2019 Oct 17;10(1):4706. doi: 10.1038/s41467-019-12464-3. Nat Commun. 2019. PMID: 31624246 Free PMC article.

2

Human memory T cells with a naive phenotype accumulate with aging and respond to persistent viruses.

Pulko V, Davies JS, Martinez C, Lanteri MC, Busch MP, Diamond MS, Knox K, Bush EC, Sims PA, Sinari S, Billheimer D, Haddad EK, Murray KO, Wertheimer AM, Nikolich-Žugich J. Pulko V, et al. Among authors: sims pa. Nat Immunol. 2016 Aug;17(8):966-75. doi: 10.1038/ni.3483. Epub 2016 Jun 6. Nat Immunol. 2016. PMID: 27270402 Free PMC article.

3

An Automated Microwell Platform for Large-Scale Single Cell RNA-Seq.

Yuan J, Sims PA. Yuan J, et al. Among authors: sims pa. Sci Rep. 2016 Sep 27;6:33883. doi: 10.1038/srep33883. Sci Rep. 2016. PMID: 27670648 Free PMC article.

4

PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens.

Bush EC, Ray F, Alvarez MJ, Realubit R, Li H, Karan C, Califano A, Sims PA. Bush EC, et al. Among authors: sims pa. Nat Commun. 2017 Jul 24;8(1):105. doi: 10.1038/s41467-017-00136-z. Nat Commun. 2017. PMID: 28740083 Free PMC article.

5

Whole tumor RNA-sequencing and deconvolution reveal a clinically-prognostic PTEN/PI3K-regulated glioma transcriptional signature.

Pan Y, Bush EC, Toonen JA, Ma Y, Solga AC, Sims PA, Gutmann DH. Pan Y, et al. Among authors: sims pa. Oncotarget. 2017 Apr 18;8(32):52474-52487. doi: 10.18632/oncotarget.17193. eCollection 2017 Aug 8. Oncotarget. 2017. PMID: 28881745 Free PMC article.

6

SPOTs fill a major gap in RNA quantification.

Yuan J, Sims PA. Yuan J, et al. Among authors: sims pa. Nat Methods. 2017 Nov 30;14(12):1137-1138. doi: 10.1038/nmeth.4515. Nat Methods. 2017. PMID: 29190269 No abstract available.

7

Single-Cell Transcriptomic Analysis of Tumor Heterogeneity.

Levitin HM, Yuan J, Sims PA. Levitin HM, et al. Among authors: sims pa. Trends Cancer. 2018 Apr;4(4):264-268. doi: 10.1016/j.trecan.2018.02.003. Epub 2018 Mar 9. Trends Cancer. 2018. PMID: 29606308 Free PMC article. Review.

8

Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm.

Ding H, Douglass EF Jr, Sonabend AM, Mela A, Bose S, Gonzalez C, Canoll PD, Sims PA, Alvarez MJ, Califano A. Ding H, et al. Among authors: sims pa. Nat Commun. 2018 Apr 16;9(1):1471. doi: 10.1038/s41467-018-03843-3. Nat Commun. 2018. PMID: 29662057 Free PMC article.

9

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma.

Pan Y, Duron C, Bush EC, Ma Y, Sims PA, Gutmann DH, Radunskaya A, Hardin J. Pan Y, et al. Among authors: sims pa. PLoS One. 2018 May 22;13(5):e0190001. doi: 10.1371/journal.pone.0190001. eCollection 2018. PLoS One. 2018. PMID: 29787563 Free PMC article.

10

Single-cell transcriptome analysis of lineage diversity in high-grade glioma.

Yuan J, Levitin HM, Frattini V, Bush EC, Boyett DM, Samanamud J, Ceccarelli M, Dovas A, Zanazzi G, Canoll P, Bruce JN, Lasorella A, Iavarone A, Sims PA. Yuan J, et al. Among authors: sims pa. Genome Med. 2018 Jul 24;10(1):57. doi: 10.1186/s13073-018-0567-9. Genome Med. 2018. PMID: 30041684 Free PMC article.

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