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Page 1
Fast statistical alignment.
Bradley RK, Roberts A, Smoot M, Juvekar S, Do J, Dewey C, Holmes I, Pachter L. Bradley RK, et al. Among authors: smoot m. PLoS Comput Biol. 2009 May;5(5):e1000392. doi: 10.1371/journal.pcbi.1000392. Epub 2009 May 29. PLoS Comput Biol. 2009. PMID: 19478997 Free PMC article.
Visualization of near-optimal sequence alignments.
Smoot ME, Guerlain SA, Pearson WR. Smoot ME, et al. Bioinformatics. 2004 Apr 12;20(6):953-8. doi: 10.1093/bioinformatics/bth013. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751975 Free PMC article.
NetworkBLAST: comparative analysis of protein networks.
Kalaev M, Smoot M, Ideker T, Sharan R. Kalaev M, et al. Among authors: smoot m. Bioinformatics. 2008 Feb 15;24(4):594-6. doi: 10.1093/bioinformatics/btm630. Epub 2008 Jan 2. Bioinformatics. 2008. PMID: 18174180
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: smoot m. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
A human MAP kinase interactome.
Bandyopadhyay S, Chiang CY, Srivastava J, Gersten M, White S, Bell R, Kurschner C, Martin C, Smoot M, Sahasrabudhe S, Barber DL, Chanda SK, Ideker T. Bandyopadhyay S, et al. Among authors: smoot m. Nat Methods. 2010 Oct;7(10):801-5. doi: 10.1038/nmeth.1506. Nat Methods. 2010. PMID: 20936779 Free PMC article.
A travel guide to Cytoscape plugins.
Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T. Saito R, et al. Nat Methods. 2012 Nov;9(11):1069-76. doi: 10.1038/nmeth.2212. Epub 2012 Nov 6. Nat Methods. 2012. PMID: 23132118 Free PMC article.
43 results