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Analysis and visualization of tree space.
Hillis DM, Heath TA, St John K. Hillis DM, et al. Among authors: st john k. Syst Biol. 2005 Jun;54(3):471-82. doi: 10.1080/10635150590946961. Syst Biol. 2005. PMID: 16012112
Towards improving searches for optimal phylogenies.
Ford E, St John K, Wheeler WC. Ford E, et al. Among authors: st john k. Syst Biol. 2015 Jan;64(1):56-65. doi: 10.1093/sysbio/syu065. Epub 2014 Aug 26. Syst Biol. 2015. PMID: 25164916
Designing fast converging phylogenetic methods.
Nakhleh L, Roshan U, St John K, Sun J, Warnow T. Nakhleh L, et al. Among authors: st john k. Bioinformatics. 2001;17 Suppl 1:S190-8. doi: 10.1093/bioinformatics/17.suppl_1.s190. Bioinformatics. 2001. PMID: 11473009
Characterizing Local Optima for Maximum Parsimony.
Urheim E, Ford E, St John K. Urheim E, et al. Among authors: st john k. Bull Math Biol. 2016 May;78(5):1058-75. doi: 10.1007/s11538-016-0174-0. Epub 2016 May 27. Bull Math Biol. 2016. PMID: 27234257
Hamiltonian walks of phylogenetic treespaces.
Gordon K, Ford E, St John K. Gordon K, et al. Among authors: st john k. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):1076-9. doi: 10.1109/TCBB.2013.105. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24334399
On Determining if Tree-based Networks Contain Fixed Trees.
Anaya M, Anipchenko-Ulaj O, Ashfaq A, Chiu J, Kaiser M, Ohsawa MS, Owen M, Pavlechko E, St John K, Suleria S, Thompson K, Yap C. Anaya M, et al. Among authors: st john k. Bull Math Biol. 2016 May;78(5):961-9. doi: 10.1007/s11538-016-0169-x. Epub 2016 Apr 28. Bull Math Biol. 2016. PMID: 27125655
83 results