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Alzheimer-related genes show accelerated evolution.
Nitsche A, Arnold C, Ueberham U, Reiche K, Fallmann J, Hackermüller J, Horn F, Stadler PF, Arendt T. Nitsche A, et al. Among authors: stadler pf. Mol Psychiatry. 2021 Oct;26(10):5790-5796. doi: 10.1038/s41380-020-0680-1. Epub 2020 Mar 13. Mol Psychiatry. 2021. PMID: 32203153 Free PMC article.
Thermodynamics of RNA-RNA binding.
Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL. Mückstein U, et al. Among authors: stadler pf. Bioinformatics. 2006 May 15;22(10):1177-82. doi: 10.1093/bioinformatics/btl024. Epub 2006 Jan 29. Bioinformatics. 2006. PMID: 16446276
Evolution of microRNAs.
Tanzer A, Stadler PF. Tanzer A, et al. Among authors: stadler pf. Methods Mol Biol. 2006;342:335-50. doi: 10.1385/1-59745-123-1:335. Methods Mol Biol. 2006. PMID: 16957387 Review.
RNAs everywhere: genome-wide annotation of structured RNAs.
Athanasius F Bompfünewerer Consortium; Backofen R, Bernhart SH, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Mosig A, Prohaska SJ, Rose D, Stadler PF, Tanzer A, Washietl S, Will S. Athanasius F Bompfünewerer Consortium, et al. Among authors: stadler pf. J Exp Zool B Mol Dev Evol. 2007 Jan 15;308(1):1-25. doi: 10.1002/jez.b.21130. J Exp Zool B Mol Dev Evol. 2007. PMID: 17171697 Review.
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering.
Will S, Reiche K, Hofacker IL, Stadler PF, Backofen R. Will S, et al. Among authors: stadler pf. PLoS Comput Biol. 2007 Apr 13;3(4):e65. doi: 10.1371/journal.pcbi.0030065. Epub 2007 Feb 22. PLoS Comput Biol. 2007. PMID: 17432929 Free PMC article.
Furthermore, we have applied it to a previously published set of 3,332 predicted structured elements in the Ciona intestinalis genome (Missal K, Rose D, Stadler PF (2005) Noncoding RNAs in Ciona intestinalis. Bioinformatics 21 (Supplement 2): i77-i78). ...
Furthermore, we have applied it to a previously published set of 3,332 predicted structured elements in the Ciona intestinalis genome (Missa …
Interleukin-6 dependent survival of multiple myeloma cells involves the Stat3-mediated induction of microRNA-21 through a highly conserved enhancer.
Löffler D, Brocke-Heidrich K, Pfeifer G, Stocsits C, Hackermüller J, Kretzschmar AK, Burger R, Gramatzki M, Blumert C, Bauer K, Cvijic H, Ullmann AK, Stadler PF, Horn F. Löffler D, et al. Among authors: stadler pf. Blood. 2007 Aug 15;110(4):1330-3. doi: 10.1182/blood-2007-03-081133. Epub 2007 May 11. Blood. 2007. PMID: 17496199 Free article.
RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR. Kapranov P, et al. Among authors: stadler pf. Science. 2007 Jun 8;316(5830):1484-8. doi: 10.1126/science.1138341. Epub 2007 May 17. Science. 2007. PMID: 17510325
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras TR, Guigó R, Snyder M, Gerstein MB, Reymond A, Hofacker IL, Stadler PF. Washietl S, et al. Among authors: stadler pf. Genome Res. 2007 Jun;17(6):852-64. doi: 10.1101/gr.5650707. Genome Res. 2007. PMID: 17568003 Free PMC article.
593 results