Taly JF - Search Results

1

STRIKE: evaluation of protein MSAs using a single 3D structure.

Kemena C, Taly JF, Kleinjung J, Notredame C. Kemena C, et al. Among authors: taly jf. Bioinformatics. 2011 Dec 15;27(24):3385-91. doi: 10.1093/bioinformatics/btr587. Epub 2011 Oct 28. Bioinformatics. 2011. PMID: 22039207 Free PMC article.

2

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee.

Chang JM, Di Tommaso P, Taly JF, Notredame C. Chang JM, et al. Among authors: taly jf. BMC Bioinformatics. 2012 Mar 28;13 Suppl 4(Suppl 4):S1. doi: 10.1186/1471-2105-13-S4-S1. BMC Bioinformatics. 2012. PMID: 22536955 Free PMC article.

3

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Kemena C, Notredame C. Taly JF, et al. Nat Protoc. 2011 Nov;6(11):1669-82. doi: 10.1038/nprot.2011.393. Nat Protoc. 2011. PMID: 21979275

4

T-Coffee: Tree-based consistency objective function for alignment evaluation.

Magis C, Taly JF, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Notredame C. Magis C, et al. Among authors: taly jf. Methods Mol Biol. 2014;1079:117-29. doi: 10.1007/978-1-62703-646-7_7. Methods Mol Biol. 2014. PMID: 24170398

5

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.

Di Tommaso P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM, Taly JF, Notredame C. Di Tommaso P, et al. Among authors: taly jf. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W13-7. doi: 10.1093/nar/gkr245. Epub 2011 May 9. Nucleic Acids Res. 2011. PMID: 21558174 Free PMC article.

6

Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations.

Chang JM, Taly JF, Erb I, Sung TY, Hsu WL, Tang CY, Notredame C, Su EC. Chang JM, et al. Among authors: taly jf. PLoS One. 2013 Oct 11;8(10):e75542. doi: 10.1371/journal.pone.0075542. eCollection 2013. PLoS One. 2013. PMID: 24146760 Free PMC article.

7

Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability.

Yau WL, Blisnick T, Taly JF, Helmer-Citterich M, Schiene-Fischer C, Leclercq O, Li J, Schmidt-Arras D, Morales MA, Notredame C, Romo D, Bastin P, Späth GF. Yau WL, et al. Among authors: taly jf. PLoS Negl Trop Dis. 2010 Jun 29;4(6):e729. doi: 10.1371/journal.pntd.0000729. PLoS Negl Trop Dis. 2010. PMID: 20614016 Free PMC article.

8

Pharmacological assessment defines Leishmania donovani casein kinase 1 as a drug target and reveals important functions in parasite viability and intracellular infection.

Rachidi N, Taly JF, Durieu E, Leclercq O, Aulner N, Prina E, Pescher P, Notredame C, Meijer L, Späth GF. Rachidi N, et al. Among authors: taly jf. Antimicrob Agents Chemother. 2014;58(3):1501-15. doi: 10.1128/AAC.02022-13. Epub 2013 Dec 23. Antimicrob Agents Chemother. 2014. PMID: 24366737 Free PMC article.

9

Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?

Taly JF, Marin A, Gibrat JF. Taly JF, et al. BMC Bioinformatics. 2008 Jan 7;9:6. doi: 10.1186/1471-2105-9-6. BMC Bioinformatics. 2008. PMID: 18179702 Free PMC article.

10

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos.

Cicin-Sain D, Pulido AH, Crombach A, Wotton KR, Jiménez-Guri E, Taly JF, Roma G, Jaeger J. Cicin-Sain D, et al. Among authors: taly jf. Nucleic Acids Res. 2015 Jan;43(Database issue):D751-5. doi: 10.1093/nar/gku1142. Epub 2014 Nov 17. Nucleic Acids Res. 2015. PMID: 25404137 Free PMC article.

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