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One model fits all: Combining inference and simulation of gene regulatory networks.
PLoS Comput Biol. 2023 Mar 27;19(3):e1010962. doi: 10.1371/journal.pcbi.1010962. eCollection 2023 Mar.
PLoS Comput Biol. 2023.
PMID: 36972296
Free PMC article.
Hematopoietic differentiation is characterized by a transient peak of entropy at a single-cell level.
Dussiau C, Boussaroque A, Gaillard M, Bravetti C, Zaroili L, Knosp C, Friedrich C, Asquier P, Willems L, Quint L, Bouscary D, Fontenay M, Espinasse T, Plesa A, Sujobert P, Gandrillon O, Kosmider O.
Dussiau C, et al. Among authors: espinasse t.
BMC Biol. 2022 Mar 9;20(1):60. doi: 10.1186/s12915-022-01264-9.
BMC Biol. 2022.
PMID: 35260165
Free PMC article.
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Inferring gene regulatory networks from single-cell data: a mechanistic approach.
Herbach U, Bonnaffoux A, Espinasse T, Gandrillon O.
Herbach U, et al. Among authors: espinasse t.
BMC Syst Biol. 2017 Nov 21;11(1):105. doi: 10.1186/s12918-017-0487-0.
BMC Syst Biol. 2017.
PMID: 29157246
Free PMC article.
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Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty.
Ventre E, Espinasse T, Bréhier CE, Calvez V, Lepoutre T, Gandrillon O.
Ventre E, et al. Among authors: espinasse t.
J Math Biol. 2021 Nov 5;83(5):59. doi: 10.1007/s00285-021-01684-1.
J Math Biol. 2021.
PMID: 34739605
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Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process.
Richard A, Boullu L, Herbach U, Bonnafoux A, Morin V, Vallin E, Guillemin A, Papili Gao N, Gunawan R, Cosette J, Arnaud O, Kupiec JJ, Espinasse T, Gonin-Giraud S, Gandrillon O.
Richard A, et al. Among authors: espinasse t.
PLoS Biol. 2016 Dec 27;14(12):e1002585. doi: 10.1371/journal.pbio.1002585. eCollection 2016 Dec.
PLoS Biol. 2016.
PMID: 28027290
Free PMC article.
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