Tiemann JK - Search Results

1

Voronoia4RNA--a database of atomic packing densities of RNA structures and their complexes.

Ismer J, Rose AS, Tiemann JK, Goede A, Rother K, Hildebrand PW. Ismer J, et al. Among authors: tiemann jk. Nucleic Acids Res. 2013 Jan;41(Database issue):D280-4. doi: 10.1093/nar/gks1061. Epub 2012 Nov 17. Nucleic Acids Res. 2013. PMID: 23161674 Free PMC article.

2

SL2: an interactive webtool for modeling of missing segments in proteins.

Ismer J, Rose AS, Tiemann JK, Goede A, Preissner R, Hildebrand PW. Ismer J, et al. Among authors: tiemann jk. Nucleic Acids Res. 2016 Jul 8;44(W1):W390-4. doi: 10.1093/nar/gkw297. Epub 2016 Apr 21. Nucleic Acids Res. 2016. PMID: 27105847 Free PMC article.

3

GPCR-SSFE 2.0-a fragment-based molecular modeling web tool for Class A G-protein coupled receptors.

Worth CL, Kreuchwig F, Tiemann JKS, Kreuchwig A, Ritschel M, Kleinau G, Hildebrand PW, Krause G. Worth CL, et al. Nucleic Acids Res. 2017 Jul 3;45(W1):W408-W415. doi: 10.1093/nar/gkx399. Nucleic Acids Res. 2017. PMID: 28582569 Free PMC article.

4

A fragment based method for modeling of protein segments into cryo-EM density maps.

Ismer J, Rose AS, Tiemann JKS, Hildebrand PW. Ismer J, et al. BMC Bioinformatics. 2017 Nov 13;18(1):475. doi: 10.1186/s12859-017-1904-5. BMC Bioinformatics. 2017. PMID: 29132296 Free PMC article.

5

MDsrv: viewing and sharing molecular dynamics simulations on the web.

Tiemann JKS, Guixà-González R, Hildebrand PW, Rose AS. Tiemann JKS, et al. Nat Methods. 2017 Nov 30;14(12):1123-1124. doi: 10.1038/nmeth.4497. Nat Methods. 2017. PMID: 29190271 No abstract available.

6

FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps.

Tiemann JK, Rose AS, Ismer J, Darvish MD, Hilal T, Spahn CM, Hildebrand PW. Tiemann JK, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W310-W314. doi: 10.1093/nar/gky424. Nucleic Acids Res. 2018. PMID: 29788317 Free PMC article.

7

Structural Insights into the Process of GPCR-G Protein Complex Formation.

Liu X, Xu X, Hilger D, Aschauer P, Tiemann JKS, Du Y, Liu H, Hirata K, Sun X, Guixà-González R, Mathiesen JM, Hildebrand PW, Kobilka BK. Liu X, et al. Cell. 2019 May 16;177(5):1243-1251.e12. doi: 10.1016/j.cell.2019.04.021. Epub 2019 May 9. Cell. 2019. PMID: 31080070 Free PMC article.

8

Bringing Molecular Dynamics Simulation Data into View.

Hildebrand PW, Rose AS, Tiemann JKS. Hildebrand PW, et al. Trends Biochem Sci. 2019 Nov;44(11):902-913. doi: 10.1016/j.tibs.2019.06.004. Epub 2019 Jul 10. Trends Biochem Sci. 2019. PMID: 31301982 Free article. Review.

9

HomolWat: a web server tool to incorporate 'homologous' water molecules into GPCR structures.

Mayol E, García-Recio A, Tiemann JKS, Hildebrand PW, Guixà-González R, Olivella M, Cordomí A. Mayol E, et al. Among authors: tiemann jks. Nucleic Acids Res. 2020 Jul 2;48(W1):W54-W59. doi: 10.1093/nar/gkaa440. Nucleic Acids Res. 2020. PMID: 32484557 Free PMC article.

10

GPCRmd uncovers the dynamics of the 3D-GPCRome.

Rodríguez-Espigares I, Torrens-Fontanals M, Tiemann JKS, Aranda-García D, Ramírez-Anguita JM, Stepniewski TM, Worp N, Varela-Rial A, Morales-Pastor A, Medel-Lacruz B, Pándy-Szekeres G, Mayol E, Giorgino T, Carlsson J, Deupi X, Filipek S, Filizola M, Gómez-Tamayo JC, Gonzalez A, Gutiérrez-de-Terán H, Jiménez-Rosés M, Jespers W, Kapla J, Khelashvili G, Kolb P, Latek D, Marti-Solano M, Matricon P, Matsoukas MT, Miszta P, Olivella M, Perez-Benito L, Provasi D, Ríos S, R Torrecillas I, Sallander J, Sztyler A, Vasile S, Weinstein H, Zachariae U, Hildebrand PW, De Fabritiis G, Sanz F, Gloriam DE, Cordomi A, Guixà-González R, Selent J. Rodríguez-Espigares I, et al. Among authors: tiemann jks. Nat Methods. 2020 Aug;17(8):777-787. doi: 10.1038/s41592-020-0884-y. Epub 2020 Jul 13. Nat Methods. 2020. PMID: 32661425

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