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A community-maintained standard library of population genetic models.
Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967.
Elife. 2020.
PMID: 32573438
Free PMC article.
Efficient ancestry and mutation simulation with msprime 1.0.
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschumar WW, Lohse K, Matschiner M, Nelson D, Pope NS, Quinto-Cortés CD, Rodrigues MF, Saunack K, Sellinger T, Thornton K, van Kemenade H, Wohns AW, Wong Y, Gravel S, Kern AD, Koskela J, Ralph PL, Kelleher J.
Baumdicker F, et al. Among authors: tsambos g.
Genetics. 2022 Mar 3;220(3):iyab229. doi: 10.1093/genetics/iyab229.
Genetics. 2022.
PMID: 34897427
Free PMC article.
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Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations.
Lauterbur ME, Cavassim MIA, Gladstein AL, Gower G, Pope NS, Tsambos G, Adrion J, Belsare S, Biddanda A, Caudill V, Cury J, Echevarria I, Haller BC, Hasan AR, Huang X, Iasi LNM, Noskova E, Obsteter J, Pavinato VAC, Pearson A, Peede D, Perez MF, Rodrigues MF, Smith CCR, Spence JP, Teterina A, Tittes S, Unneberg P, Vazquez JM, Waples RK, Wohns AW, Wong Y, Baumdicker F, Cartwright RA, Gorjanc G, Gutenkunst RN, Kelleher J, Kern AD, Ragsdale AP, Ralph PL, Schrider DR, Gronau I.
Lauterbur ME, et al. Among authors: tsambos g.
Elife. 2023 Jun 21;12:RP84874. doi: 10.7554/eLife.84874.
Elife. 2023.
PMID: 37342968
Free PMC article.
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Indigenous Australian genomes show deep structure and rich novel variation.
Silcocks M, Farlow A, Hermes A, Tsambos G, Patel HR, Huebner S, Baynam G, Jenkins MR, Vukcevic D, Easteal S, Leslie S; National Centre for Indigenous Genomics.
Silcocks M, et al. Among authors: tsambos g.
Nature. 2023 Dec;624(7992):593-601. doi: 10.1038/s41586-023-06831-w. Epub 2023 Dec 13.
Nature. 2023.
PMID: 38093005
Free PMC article.
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link-ancestors: fast simulation of local ancestry with tree sequence software.
Tsambos G, Kelleher J, Ralph P, Leslie S, Vukcevic D.
Tsambos G, et al.
Bioinform Adv. 2023 Nov 20;3(1):vbad163. doi: 10.1093/bioadv/vbad163. eCollection 2023.
Bioinform Adv. 2023.
PMID: 38033661
Free PMC article.
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