Umeda M - Search Results

1

Local states of chromatin compaction at transcription start sites control transcription levels.

Ishihara S, Sasagawa Y, Kameda T, Yamashita H, Umeda M, Kotomura N, Abe M, Shimono Y, Nikaido I. Ishihara S, et al. Among authors: umeda m. Nucleic Acids Res. 2021 Aug 20;49(14):8007-8023. doi: 10.1093/nar/gkab587. Nucleic Acids Res. 2021. PMID: 34233004 Free PMC article.

2

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs.

Hayashi T, Ozaki H, Sasagawa Y, Umeda M, Danno H, Nikaido I. Hayashi T, et al. Among authors: umeda m. Nat Commun. 2018 Feb 12;9(1):619. doi: 10.1038/s41467-018-02866-0. Nat Commun. 2018. PMID: 29434199 Free PMC article.

3

Polysaccharide hydrolase of the hadal zone amphipods Hirondellea gigas.

Kobayashi H, Nagahama T, Arai W, Sasagawa Y, Umeda M, Hayashi T, Nikaido I, Watanabe H, Oguri K, Kitazato H, Fujioka K, Kido Y, Takami H. Kobayashi H, et al. Among authors: umeda m. Biosci Biotechnol Biochem. 2018 Jul;82(7):1123-1133. doi: 10.1080/09168451.2018.1459178. Epub 2018 Apr 6. Biosci Biotechnol Biochem. 2018. PMID: 29623763

4

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets.

Ozaki H, Hayashi T, Umeda M, Nikaido I. Ozaki H, et al. Among authors: umeda m. BMC Genomics. 2020 Mar 3;21(1):177. doi: 10.1186/s12864-020-6542-z. BMC Genomics. 2020. PMID: 32122302 Free PMC article.

5

The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression.

Michida H, Imoto H, Shinohara H, Yumoto N, Seki M, Umeda M, Hayashi T, Nikaido I, Kasukawa T, Suzuki Y, Okada-Hatakeyama M. Michida H, et al. Among authors: umeda m. Cell Rep. 2020 Jun 2;31(9):107724. doi: 10.1016/j.celrep.2020.107724. Cell Rep. 2020. PMID: 32492432 Free article.

6

Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.

Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T, Okamura T, Ohkawa Y, Kimura H, Nikaido I. Ochiai H, et al. Among authors: umeda m. Sci Adv. 2020 Jun 17;6(25):eaaz6699. doi: 10.1126/sciadv.aaz6699. eCollection 2020 Jun. Sci Adv. 2020. PMID: 32596448 Free PMC article.

7

Tracing the origin of hair follicle stem cells.

Morita R, Sanzen N, Sasaki H, Hayashi T, Umeda M, Yoshimura M, Yamamoto T, Shibata T, Abe T, Kiyonari H, Furuta Y, Nikaido I, Fujiwara H. Morita R, et al. Among authors: umeda m. Nature. 2021 Jun;594(7864):547-552. doi: 10.1038/s41586-021-03638-5. Epub 2021 Jun 9. Nature. 2021. PMID: 34108685

8

Single-oocyte transcriptome analysis reveals aging-associated effects influenced by life stage and calorie restriction.

Mishina T, Tabata N, Hayashi T, Yoshimura M, Umeda M, Mori M, Ikawa Y, Hamada H, Nikaido I, Kitajima TS. Mishina T, et al. Among authors: umeda m. Aging Cell. 2021 Aug;20(8):e13428. doi: 10.1111/acel.13428. Epub 2021 Jul 10. Aging Cell. 2021. PMID: 34245092 Free PMC article.

9

Derepression of inflammation-related genes link to microglia activation and neural maturation defect in a mouse model of Kleefstra syndrome.

Yamada A, Hirasawa T, Nishimura K, Shimura C, Kogo N, Fukuda K, Kato M, Yokomori M, Hayashi T, Umeda M, Yoshimura M, Iwakura Y, Nikaido I, Itohara S, Shinkai Y. Yamada A, et al. Among authors: umeda m. iScience. 2021 Jun 17;24(7):102741. doi: 10.1016/j.isci.2021.102741. eCollection 2021 Jul 23. iScience. 2021. PMID: 34258564 Free PMC article.

10

An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data.

Matsumoto H, Hayashi T, Ozaki H, Tsuyuzaki K, Umeda M, Iida T, Nakamura M, Okano H, Nikaido I. Matsumoto H, et al. Among authors: umeda m. NAR Genom Bioinform. 2019 Dec 16;2(1):lqz020. doi: 10.1093/nargab/lqz020. eCollection 2020 Mar. NAR Genom Bioinform. 2019. PMID: 34632380 Free PMC article.

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