Valen E - Search Results

1

Identifying (non-)coding RNAs and small peptides: challenges and opportunities.

Pauli A, Valen E, Schier AF. Pauli A, et al. Among authors: valen e. Bioessays. 2015 Jan;37(1):103-12. doi: 10.1002/bies.201400103. Epub 2014 Oct 24. Bioessays. 2015. PMID: 25345765 Free PMC article. Review.

2

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF. Pauli A, et al. Among authors: valen e. Genome Res. 2012 Mar;22(3):577-91. doi: 10.1101/gr.133009.111. Epub 2011 Nov 22. Genome Res. 2012. PMID: 22110045 Free PMC article.

3

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.

Chew GL, Pauli A, Rinn JL, Regev A, Schier AF, Valen E. Chew GL, et al. Among authors: valen e. Development. 2013 Jul;140(13):2828-34. doi: 10.1242/dev.098343. Epub 2013 May 22. Development. 2013. PMID: 23698349 Free PMC article.

4

Toddler: an embryonic signal that promotes cell movement via Apelin receptors.

Pauli A, Norris ML, Valen E, Chew GL, Gagnon JA, Zimmerman S, Mitchell A, Ma J, Dubrulle J, Reyon D, Tsai SQ, Joung JK, Saghatelian A, Schier AF. Pauli A, et al. Among authors: valen e. Science. 2014 Feb 14;343(6172):1248636. doi: 10.1126/science.1248636. Epub 2014 Jan 9. Science. 2014. PMID: 24407481 Free PMC article.

5

Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs.

Gagnon JA, Valen E, Thyme SB, Huang P, Akhmetova L, Pauli A, Montague TG, Zimmerman S, Richter C, Schier AF. Gagnon JA, et al. Among authors: valen e. PLoS One. 2014 May 29;9(5):e98186. doi: 10.1371/journal.pone.0098186. eCollection 2014. PLoS One. 2014. PMID: 24873830 Free PMC article.

6

Internal guide RNA interactions interfere with Cas9-mediated cleavage.

Thyme SB, Akhmetova L, Montague TG, Valen E, Schier AF. Thyme SB, et al. Among authors: valen e. Nat Commun. 2016 Jun 10;7:11750. doi: 10.1038/ncomms11750. Nat Commun. 2016. PMID: 27282953 Free PMC article.

7

Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus.

Merkle FT, Neuhausser WM, Santos D, Valen E, Gagnon JA, Maas K, Sandoe J, Schier AF, Eggan K. Merkle FT, et al. Among authors: valen e. Cell Rep. 2015 May 12;11(6):875-883. doi: 10.1016/j.celrep.2015.04.007. Epub 2015 Apr 30. Cell Rep. 2015. PMID: 25937281 Free PMC article.

8

Nuclear stability and transcriptional directionality separate functionally distinct RNA species.

Andersson R, Refsing Andersen P, Valen E, Core LJ, Bornholdt J, Boyd M, Heick Jensen T, Sandelin A. Andersson R, et al. Among authors: valen e. Nat Commun. 2014 Nov 12;5:5336. doi: 10.1038/ncomms6336. Nat Commun. 2014. PMID: 25387874 Free article.

9

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes.

Valen E, Preker P, Andersen PR, Zhao X, Chen Y, Ender C, Dueck A, Meister G, Sandelin A, Jensen TH. Valen E, et al. Nat Struct Mol Biol. 2011 Aug 7;18(9):1075-82. doi: 10.1038/nsmb.2091. Nat Struct Mol Biol. 2011. PMID: 21822281

10

ORFik: a comprehensive R toolkit for the analysis of translation.

Tjeldnes H, Labun K, Torres Cleuren Y, Chyżyńska K, Świrski M, Valen E. Tjeldnes H, et al. Among authors: valen e. BMC Bioinformatics. 2021 Jun 19;22(1):336. doi: 10.1186/s12859-021-04254-w. BMC Bioinformatics. 2021. PMID: 34147079 Free PMC article.

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