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Page 1
The Impact of Mathematical Modeling in Understanding the Mechanisms Underlying Neurodegeneration: Evolving Dimensions and Future Directions.
CPT Pharmacometrics Syst Pharmacol. 2017 Feb;6(2):73-86. doi: 10.1002/psp4.12155. Epub 2017 Jan 7.
CPT Pharmacometrics Syst Pharmacol. 2017.
PMID: 28063254
Free PMC article.
Review.
Using Reactome to build an autophagy mechanism knowledgebase.
Varusai TM, Jupe S, Sevilla C, Matthews L, Gillespie M, Stein L, Wu G, D'Eustachio P, Metzakopian E, Hermjakob H.
Varusai TM, et al.
Autophagy. 2021 Jun;17(6):1543-1554. doi: 10.1080/15548627.2020.1761659. Epub 2020 Jun 2.
Autophagy. 2021.
PMID: 32486891
Free PMC article.
Item in Clipboard
BioModels-15 years of sharing computational models in life science.
Malik-Sheriff RS, Glont M, Nguyen TVN, Tiwari K, Roberts MG, Xavier A, Vu MT, Men J, Maire M, Kananathan S, Fairbanks EL, Meyer JP, Arankalle C, Varusai TM, Knight-Schrijver V, Li L, Dueñas-Roca C, Dass G, Keating SM, Park YM, Buso N, Rodriguez N, Hucka M, Hermjakob H.
Malik-Sheriff RS, et al. Among authors: varusai tm.
Nucleic Acids Res. 2020 Jan 8;48(D1):D407-D415. doi: 10.1093/nar/gkz1055.
Nucleic Acids Res. 2020.
PMID: 31701150
Free PMC article.
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Toward Community Standards and Software for Whole-Cell Modeling.
Waltemath D, Karr JR, Bergmann FT, Chelliah V, Hucka M, Krantz M, Liebermeister W, Mendes P, Myers CJ, Pir P, Alaybeyoglu B, Aranganathan NK, Baghalian K, Bittig AT, Burke PE, Cantarelli M, Chew YH, Costa RS, Cursons J, Czauderna T, Goldberg AP, Gomez HF, Hahn J, Hameri T, Gardiol DF, Kazakiewicz D, Kiselev I, Knight-Schrijver V, Knupfer C, Konig M, Lee D, Lloret-Villas A, Mandrik N, Medley JK, Moreau B, Naderi-Meshkin H, Palaniappan SK, Priego-Espinosa D, Scharm M, Sharma M, Smallbone K, Stanford NJ, Song JH, Theile T, Tokic M, Tomar N, Toure V, Uhlendorf J, Varusai TM, Watanabe LH, Wendland F, Wolfien M, Yurkovich JT, Zhu Y, Zardilis A, Zhukova A, Schreiber F.
Waltemath D, et al. Among authors: varusai tm.
IEEE Trans Biomed Eng. 2016 Oct;63(10):2007-14. doi: 10.1109/TBME.2016.2560762. Epub 2016 Jun 10.
IEEE Trans Biomed Eng. 2016.
PMID: 27305665
Free PMC article.
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Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR.
Varusai TM, Nguyen LK.
Varusai TM, et al.
Sci Rep. 2018 Jan 12;8(1):643. doi: 10.1038/s41598-017-18400-z.
Sci Rep. 2018.
PMID: 29330362
Free PMC article.
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Ubiquitin chain specific auto-ubiquitination triggers sustained oscillation, bistable switches and excitable firing.
Nguyen LK, Zhao Q, Varusai TM, Kholodenko BN.
Nguyen LK, et al. Among authors: varusai tm.
IET Syst Biol. 2014 Dec;8(6):282-92. doi: 10.1049/iet-syb.2014.0024.
IET Syst Biol. 2014.
PMID: 25478702
Free PMC article.
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Protein-protein interactions generate hidden feedback and feed-forward loops to trigger bistable switches, oscillations and biphasic dose-responses.
Varusai TM, Kolch W, Kholodenko BN, Nguyen LK.
Varusai TM, et al.
Mol Biosyst. 2015 Oct;11(10):2750-62. doi: 10.1039/c5mb00385g.
Mol Biosyst. 2015.
PMID: 26266875
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