Wang Y - Search Results

1

Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation.

Xin J, Zhang H, He Y, Duren Z, Bai C, Chen L, Luo X, Yan DS, Zhang C, Zhu X, Yuan Q, Feng Z, Cui C, Qi X, Ouzhuluobu, Wong WH, Wang Y, Su B. Xin J, et al. Among authors: wang y. Nat Commun. 2020 Oct 1;11(1):4928. doi: 10.1038/s41467-020-18638-8. Nat Commun. 2020. PMID: 33004791 Free PMC article.

2

Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition.

Fan W, Lam SM, Xin J, Yang X, Liu Z, Liu Y, Wang Y, Shui G, Huang X. Fan W, et al. Among authors: wang y. PLoS Genet. 2017 Mar 8;13(3):e1006664. doi: 10.1371/journal.pgen.1006664. eCollection 2017 Mar. PLoS Genet. 2017. PMID: 28273089 Free PMC article.

3

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data.

Zamanighomi M, Lin Z, Wang Y, Jiang R, Wong WH. Zamanighomi M, et al. Among authors: wang y. Nucleic Acids Res. 2017 Jun 2;45(10):5666-5677. doi: 10.1093/nar/gkx358. Nucleic Acids Res. 2017. PMID: 28472398 Free PMC article.

4

Modeling gene regulation from paired expression and chromatin accessibility data.

Duren Z, Chen X, Jiang R, Wang Y, Wong WH. Duren Z, et al. Among authors: wang y. Proc Natl Acad Sci U S A. 2017 Jun 20;114(25):E4914-E4923. doi: 10.1073/pnas.1704553114. Epub 2017 Jun 2. Proc Natl Acad Sci U S A. 2017. PMID: 28576882 Free PMC article.

5

Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data.

Wang Y, Jiang R, Wong WH. Wang Y, et al. Natl Sci Rev. 2016 Jun;3(2):240-251. doi: 10.1093/nsr/nww025. Epub 2016 Apr 19. Natl Sci Rev. 2016. PMID: 28690910 Free PMC article.

6

Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations.

Duren Z, Chen X, Zamanighomi M, Zeng W, Satpathy AT, Chang HY, Wang Y, Wong WH. Duren Z, et al. Among authors: wang y. Proc Natl Acad Sci U S A. 2018 Jul 24;115(30):7723-7728. doi: 10.1073/pnas.1805681115. Epub 2018 Jul 9. Proc Natl Acad Sci U S A. 2018. PMID: 29987051 Free PMC article.

7

TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment.

Li L, Wang Y, Torkelson JL, Shankar G, Pattison JM, Zhen HH, Fang F, Duren Z, Xin J, Gaddam S, Melo SP, Piekos SN, Li J, Liaw EJ, Chen L, Li R, Wernig M, Wong WH, Chang HY, Oro AE. Li L, et al. Among authors: wang y. Cell Stem Cell. 2019 Feb 7;24(2):271-284.e8. doi: 10.1016/j.stem.2018.12.012. Epub 2019 Jan 24. Cell Stem Cell. 2019. PMID: 30686763 Free PMC article.

8

hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context.

Feng Z, Duren Z, Xiong Z, Wang S, Liu F, Wong WH, Wang Y. Feng Z, et al. Among authors: wang y, wang s. Commun Biol. 2021 Apr 6;4(1):442. doi: 10.1038/s42003-021-01970-0. Commun Biol. 2021. PMID: 33824393 Free PMC article.

9

Integrated profiling of human pancreatic cancer organoids reveals chromatin accessibility features associated with drug sensitivity.

Shi X, Li Y, Yuan Q, Tang S, Guo S, Zhang Y, He J, Zhang X, Han M, Liu Z, Zhu Y, Gao S, Wang H, Xu X, Zheng K, Jing W, Chen L, Wang Y, Jin G, Gao D. Shi X, et al. Among authors: wang h, wang y. Nat Commun. 2022 Apr 21;13(1):2169. doi: 10.1038/s41467-022-29857-6. Nat Commun. 2022. PMID: 35449156 Free PMC article.

10

Annotating regulatory elements by heterogeneous network embedding.

Lu Y, Feng Z, Zhang S, Wang Y. Lu Y, et al. Among authors: wang y. Bioinformatics. 2022 May 13;38(10):2899-2911. doi: 10.1093/bioinformatics/btac185. Bioinformatics. 2022. PMID: 35561169 Free PMC article.

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