Weisser H - Search Results

1

OpenMS: a flexible open-source software platform for mass spectrometry data analysis.

Röst HL, Sachsenberg T, Aiche S, Bielow C, Weisser H, Aicheler F, Andreotti S, Ehrlich HC, Gutenbrunner P, Kenar E, Liang X, Nahnsen S, Nilse L, Pfeuffer J, Rosenberger G, Rurik M, Schmitt U, Veit J, Walzer M, Wojnar D, Wolski WE, Schilling O, Choudhary JS, Malmström L, Aebersold R, Reinert K, Kohlbacher O. Röst HL, et al. Among authors: weisser h. Nat Methods. 2016 Aug 30;13(9):741-8. doi: 10.1038/nmeth.3959. Nat Methods. 2016. PMID: 27575624

2

Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry-based proteomics.

Malmström J, Karlsson C, Nordenfelt P, Ossola R, Weisser H, Quandt A, Hansson K, Aebersold R, Malmström L, Björck L. Malmström J, et al. Among authors: weisser h. J Biol Chem. 2012 Jan 6;287(2):1415-25. doi: 10.1074/jbc.M111.267674. Epub 2011 Nov 23. J Biol Chem. 2012. PMID: 22117078 Free PMC article.

3

An automated pipeline for high-throughput label-free quantitative proteomics.

Weisser H, Nahnsen S, Grossmann J, Nilse L, Quandt A, Brauer H, Sturm M, Kenar E, Kohlbacher O, Aebersold R, Malmström L. Weisser H, et al. J Proteome Res. 2013 Apr 5;12(4):1628-44. doi: 10.1021/pr300992u. Epub 2013 Feb 22. J Proteome Res. 2013. PMID: 23391308

4

Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis.

Oliveira AP, Ludwig C, Zampieri M, Weisser H, Aebersold R, Sauer U. Oliveira AP, et al. Among authors: weisser h. Sci Signal. 2015 Apr 28;8(374):rs4. doi: 10.1126/scisignal.2005768. Sci Signal. 2015. PMID: 25921291

5

Prediction of colorectal cancer diagnosis based on circulating plasma proteins.

Surinova S, Choi M, Tao S, Schüffler PJ, Chang CY, Clough T, Vysloužil K, Khoylou M, Srovnal J, Liu Y, Matondo M, Hüttenhain R, Weisser H, Buhmann JM, Hajdúch M, Brenner H, Vitek O, Aebersold R. Surinova S, et al. Among authors: weisser h. EMBO Mol Med. 2015 Sep;7(9):1166-78. doi: 10.15252/emmm.201404873. EMBO Mol Med. 2015. PMID: 26253081 Free PMC article.

6

Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow.

Wright JC, Mudge J, Weisser H, Barzine MP, Gonzalez JM, Brazma A, Choudhary JS, Harrow J. Wright JC, et al. Among authors: weisser h. Nat Commun. 2016 Jun 2;7:11778. doi: 10.1038/ncomms11778. Nat Commun. 2016. PMID: 27250503 Free PMC article.

7

Flexible Data Analysis Pipeline for High-Confidence Proteogenomics.

Weisser H, Wright JC, Mudge JM, Gutenbrunner P, Choudhary JS. Weisser H, et al. J Proteome Res. 2016 Dec 2;15(12):4686-4695. doi: 10.1021/acs.jproteome.6b00765. Epub 2016 Nov 10. J Proteome Res. 2016. PMID: 27786492 Free PMC article.

8

Targeted Feature Detection for Data-Dependent Shotgun Proteomics.

Weisser H, Choudhary JS. Weisser H, et al. J Proteome Res. 2017 Aug 4;16(8):2964-2974. doi: 10.1021/acs.jproteome.7b00248. Epub 2017 Jul 19. J Proteome Res. 2017. PMID: 28673088 Free PMC article.

9

Evaluation of a Dual Isolation Width Acquisition Method for Isobaric Labeling Ratio Decompression.

Roumeliotis TI, Weisser H, Choudhary JS. Roumeliotis TI, et al. Among authors: weisser h. J Proteome Res. 2019 Mar 1;18(3):1433-1440. doi: 10.1021/acs.jproteome.8b00870. Epub 2019 Jan 3. J Proteome Res. 2019. PMID: 30576155 Free PMC article.

10

A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry.

Wein S, Andrews B, Sachsenberg T, Santos-Rosa H, Kohlbacher O, Kouzarides T, Garcia BA, Weisser H. Wein S, et al. Among authors: weisser h. Nat Commun. 2020 Feb 17;11(1):926. doi: 10.1038/s41467-020-14665-7. Nat Commun. 2020. PMID: 32066737 Free PMC article.

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