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RNase H-based analysis of synthetic mRNA 5' cap incorporation.
RNA. 2022 Aug;28(8):1144-1155. doi: 10.1261/rna.079173.122. Epub 2022 Jun 9.
RNA. 2022.
PMID: 35680168
Free PMC article.
The yeast scavenger decapping enzyme DcpS and its application for in vitro RNA recapping.
Wulf MG, Buswell J, Chan SH, Dai N, Marks K, Martin ER, Tzertzinis G, Whipple JM, Corrêa IR Jr, Schildkraut I.
Wulf MG, et al. Among authors: whipple jm.
Sci Rep. 2019 Jun 13;9(1):8594. doi: 10.1038/s41598-019-45083-5.
Sci Rep. 2019.
PMID: 31197197
Free PMC article.
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Genome-wide profiling of the C. elegans dsRNAome.
Whipple JM, Youssef OA, Aruscavage PJ, Nix DA, Hong C, Johnson WE, Bass BL.
Whipple JM, et al.
RNA. 2015 May;21(5):786-800. doi: 10.1261/rna.048801.114. Epub 2015 Mar 24.
RNA. 2015.
PMID: 25805852
Free PMC article.
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tRNAs marked with CCACCA are targeted for degradation.
Wilusz JE, Whipple JM, Phizicky EM, Sharp PA.
Wilusz JE, et al. Among authors: whipple jm.
Science. 2011 Nov 11;334(6057):817-21. doi: 10.1126/science.1213671.
Science. 2011.
PMID: 22076379
Free PMC article.
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The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications.
Dewe JM, Whipple JM, Chernyakov I, Jaramillo LN, Phizicky EM.
Dewe JM, et al. Among authors: whipple jm.
RNA. 2012 Oct;18(10):1886-96. doi: 10.1261/rna.033654.112. Epub 2012 Aug 15.
RNA. 2012.
PMID: 22895820
Free PMC article.
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The yeast rapid tRNA decay pathway primarily monitors the structural integrity of the acceptor and T-stems of mature tRNA.
Whipple JM, Lane EA, Chernyakov I, D'Silva S, Phizicky EM.
Whipple JM, et al.
Genes Dev. 2011 Jun 1;25(11):1173-84. doi: 10.1101/gad.2050711.
Genes Dev. 2011.
PMID: 21632824
Free PMC article.
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Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1.
Chernyakov I, Whipple JM, Kotelawala L, Grayhack EJ, Phizicky EM.
Chernyakov I, et al. Among authors: whipple jm.
Genes Dev. 2008 May 15;22(10):1369-80. doi: 10.1101/gad.1654308. Epub 2008 Apr 28.
Genes Dev. 2008.
PMID: 18443146
Free PMC article.
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Biochemical characterization of mRNA capping enzyme from Faustovirus.
Chan SH, Molé CN, Nye D, Mitchell L, Dai N, Buss J, Kneller DW, Whipple JM, Robb GB.
Chan SH, et al. Among authors: whipple jm.
RNA. 2023 Nov;29(11):1803-1817. doi: 10.1261/rna.079738.123. Epub 2023 Aug 25.
RNA. 2023.
PMID: 37625853
Free PMC article.
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