LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search.
Will S, Siebauer MF, Heyne S, Engelhardt J, Stadler PF, Reiche, Backofen R.
Will S, et al.
Algorithms Mol Biol. 2013 Apr 20;8:14. doi: 10.1186/1748-7188-8-14. eCollection 2013.
Algorithms Mol Biol. 2013.
PMID: 23601347
Free PMC article.
As a search engine we devised a semi-global scanning variant of LocARNA's algorithm for sequence-structure alignment. The LocARNAscan tool is optimized for speed and low memory consumption. ...In transcriptome-wide applications, such methods will provide accurate st …
As a search engine we devised a semi-global scanning variant of LocARNA's algorithm for sequence-structure alignment. The LocARNAscan …