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Page 1
Next-generation characterization of the Cancer Cell Line Encyclopedia.
Nature. 2019 May;569(7757):503-508. doi: 10.1038/s41586-019-1186-3. Epub 2019 May 8.
Nature. 2019.
PMID: 31068700
Free PMC article.
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors.
Slyper M, Porter CBM, Ashenberg O, Waldman J, Drokhlyansky E, Wakiro I, Smillie C, Smith-Rosario G, Wu J, Dionne D, Vigneau S, Jané-Valbuena J, Tickle TL, Napolitano S, Su MJ, Patel AG, Karlstrom A, Gritsch S, Nomura M, Waghray A, Gohil SH, Tsankov AM, Jerby-Arnon L, Cohen O, Klughammer J, Rosen Y, Gould J, Nguyen L, Hofree M, Tramontozzi PJ, Li B, Wu CJ, Izar B, Haq R, Hodi FS, Yoon CH, Hata AN, Baker SJ, Suvà ML, Bueno R, Stover EH, Clay MR, Dyer MA, Collins NB, Matulonis UA, Wagle N, Johnson BE, Rotem A, Rozenblatt-Rosen O, Regev A.
Slyper M, et al. Among authors: rosen y.
Nat Med. 2020 May;26(5):792-802. doi: 10.1038/s41591-020-0844-1. Epub 2020 May 11.
Nat Med. 2020.
PMID: 32405060
Free PMC article.
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Interactive, integrated analysis of single-cell transcriptomic and phylogenetic data with PhyloVision.
Jones MG, Rosen Y, Yosef N.
Jones MG, et al. Among authors: rosen y.
Cell Rep Methods. 2022 Apr 25;2(4):100200. doi: 10.1016/j.crmeth.2022.100200. eCollection 2022 Apr 25.
Cell Rep Methods. 2022.
PMID: 35497495
Free PMC article.
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Towards Universal Cell Embeddings: Integrating Single-cell RNA-seq Datasets across Species with SATURN.
Rosen Y, Brbić M, Roohani Y, Swanson K, Li Z, Leskovec J.
Rosen Y, et al.
bioRxiv [Preprint]. 2023 Sep 24:2023.02.03.526939. doi: 10.1101/2023.02.03.526939.
bioRxiv. 2023.
PMID: 36778387
Free PMC article.
Updated.
Preprint.
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Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq.
Li B, Gould J, Yang Y, Sarkizova S, Tabaka M, Ashenberg O, Rosen Y, Slyper M, Kowalczyk MS, Villani AC, Tickle T, Hacohen N, Rozenblatt-Rosen O, Regev A.
Li B, et al. Among authors: rosen y.
Nat Methods. 2020 Aug;17(8):793-798. doi: 10.1038/s41592-020-0905-x. Epub 2020 Jul 27.
Nat Methods. 2020.
PMID: 32719530
Free PMC article.
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Toward universal cell embeddings: integrating single-cell RNA-seq datasets across species with SATURN.
Rosen Y, Brbić M, Roohani Y, Swanson K, Li Z, Leskovec J.
Rosen Y, et al.
Nat Methods. 2024 Feb 16. doi: 10.1038/s41592-024-02191-z. Online ahead of print.
Nat Methods. 2024.
PMID: 38366243
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Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors.
Slyper M, Porter CBM, Ashenberg O, Waldman J, Drokhlyansky E, Wakiro I, Smillie C, Smith-Rosario G, Wu J, Dionne D, Vigneau S, Jané-Valbuena J, Tickle TL, Napolitano S, Su MJ, Patel AG, Karlstrom A, Gritsch S, Nomura M, Waghray A, Gohil SH, Tsankov AM, Jerby-Arnon L, Cohen O, Klughammer J, Rosen Y, Gould J, Nguyen L, Hofree M, Tramontozzi PJ, Li B, Wu CJ, Izar B, Haq R, Hodi FS, Yoon CH, Hata AN, Baker SJ, Suvà ML, Bueno R, Stover EH, Clay MR, Dyer MA, Collins NB, Matulonis UA, Wagle N, Johnson BE, Rotem A, Rozenblatt-Rosen O, Regev A.
Slyper M, et al. Among authors: rosen y.
Nat Med. 2020 Aug;26(8):1307. doi: 10.1038/s41591-020-0976-3.
Nat Med. 2020.
PMID: 32587393
Free PMC article.
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