Ye R - Search Results

1

R-loops coordinate with SOX2 in regulating reprogramming to pluripotency.

Li Y, Song Y, Xu W, Li Q, Wang X, Li K, Wang J, Liu Z, Velychko S, Ye R, Xia Q, Wang L, Guo R, Dong X, Zheng Z, Dai Y, Li H, Yao M, Xue Y, Schöler HR, Sun Q, Yao H. Li Y, et al. Among authors: ye r. Sci Adv. 2020 Jun 10;6(24):eaba0777. doi: 10.1126/sciadv.aba0777. eCollection 2020 Jun. Sci Adv. 2020. PMID: 32704541 Free PMC article.

2

The RNA-binding protein ROD1/PTBP3 cotranscriptionally defines AID-loading sites to mediate antibody class switch in mammalian genomes.

Chen J, Cai Z, Bai M, Yu X, Zhang C, Cao C, Hu X, Wang L, Su R, Wang D, Wang L, Yao Y, Ye R, Hou B, Yu Y, Yu S, Li J, Xue Y. Chen J, et al. Among authors: ye r. Cell Res. 2018 Oct;28(10):981-995. doi: 10.1038/s41422-018-0076-9. Epub 2018 Aug 24. Cell Res. 2018. PMID: 30143796 Free PMC article.

3

RIC-seq for global in situ profiling of RNA-RNA spatial interactions.

Cai Z, Cao C, Ji L, Ye R, Wang D, Xia C, Wang S, Du Z, Hu N, Yu X, Chen J, Wang L, Yang X, He S, Xue Y. Cai Z, et al. Among authors: ye r. Nature. 2020 Jun;582(7812):432-437. doi: 10.1038/s41586-020-2249-1. Epub 2020 May 6. Nature. 2020. PMID: 32499643

4

Enhancer RNA: biogenesis, function, and regulation.

Ye R, Cao C, Xue Y. Ye R, et al. Essays Biochem. 2020 Dec 7;64(6):883-894. doi: 10.1042/EBC20200014. Essays Biochem. 2020. PMID: 33034351 Review.

5

Global in situ profiling of RNA-RNA spatial interactions with RIC-seq.

Cao C, Cai Z, Ye R, Su R, Hu N, Zhao H, Xue Y. Cao C, et al. Among authors: ye r. Nat Protoc. 2021 Jun;16(6):2916-2946. doi: 10.1038/s41596-021-00524-2. Epub 2021 May 21. Nat Protoc. 2021. PMID: 34021296

6

Emerging roles of RNA-RNA interactions in transcriptional regulation.

Wang D, Ye R, Cai Z, Xue Y. Wang D, et al. Among authors: ye r. Wiley Interdiscip Rev RNA. 2022 Sep;13(5):e1712. doi: 10.1002/wrna.1712. Epub 2022 Jan 18. Wiley Interdiscip Rev RNA. 2022. PMID: 35042277 Review.

7

Capture RIC-seq reveals positional rules of PTBP1-associated RNA loops in splicing regulation.

Ye R, Hu N, Cao C, Su R, Xu S, Yang C, Zhou X, Xue Y. Ye R, et al. Mol Cell. 2023 Apr 20;83(8):1311-1327.e7. doi: 10.1016/j.molcel.2023.03.001. Epub 2023 Mar 22. Mol Cell. 2023. PMID: 36958328

8

CRIC-seq protocol for in situ profiling of proximal RNA-RNA contacts associated with RNA-binding proteins.

Ye R, Hu N, Xue Y. Ye R, et al. STAR Protoc. 2023 Sep 15;4(3):102401. doi: 10.1016/j.xpro.2023.102401. Epub 2023 Jul 4. STAR Protoc. 2023. PMID: 37405924 Free PMC article.

9

Complementary Alu sequences mediate enhancer-promoter selectivity.

Liang L, Cao C, Ji L, Cai Z, Wang D, Ye R, Chen J, Yu X, Zhou J, Bai Z, Wang R, Yang X, Zhu P, Xue Y. Liang L, et al. Among authors: ye r. Nature. 2023 Jul;619(7971):868-875. doi: 10.1038/s41586-023-06323-x. Epub 2023 Jul 12. Nature. 2023. PMID: 37438529

10

Publisher Correction: Complementary Alu sequences mediate enhancer-promoter selectivity.

Liang L, Cao C, Ji L, Cai Z, Wang D, Ye R, Chen J, Yu X, Zhou J, Bai Z, Wang R, Yang X, Zhu P, Xue Y. Liang L, et al. Among authors: ye r. Nature. 2023 Aug;620(7975):E26. doi: 10.1038/s41586-023-06475-w. Nature. 2023. PMID: 37524778 No abstract available.

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