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ALEA: a toolbox for allele-specific epigenomics analysis.
Younesy H, Möller T, Heravi-Moussavi A, Cheng JB, Costello JF, Lorincz MC, Karimi MM, Jones SJ. Younesy H, et al. Bioinformatics. 2014 Apr 15;30(8):1172-1174. doi: 10.1093/bioinformatics/btt744. Epub 2013 Dec 26. Bioinformatics. 2014. PMID: 24371156
VisRseq: R-based visual framework for analysis of sequencing data.
Younesy H, Möller T, Lorincz MC, Karimi MM, Jones SJ. Younesy H, et al. BMC Bioinformatics. 2015;16 Suppl 11(Suppl 11):S2. doi: 10.1186/1471-2105-16-S11-S2. Epub 2015 Aug 13. BMC Bioinformatics. 2015. PMID: 26328469 Free PMC article.
ChAsE: chromatin analysis and exploration tool.
Younesy H, Nielsen CB, Lorincz MC, Jones SJ, Karimi MM, Möller T. Younesy H, et al. Bioinformatics. 2016 Nov 1;32(21):3324-3326. doi: 10.1093/bioinformatics/btw382. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378294 Free PMC article.
ModEx: a general purpose computer model exploration system.
Younesy H, Pober J, Möller T, Karimi MM. Younesy H, et al. Front Bioinform. 2023 May 25;3:1153800. doi: 10.3389/fbinf.2023.1153800. eCollection 2023. Front Bioinform. 2023. PMID: 37304402 Free PMC article.
Spark: a navigational paradigm for genomic data exploration.
Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ. Nielsen CB, et al. Among authors: younesy h. Genome Res. 2012 Nov;22(11):2262-9. doi: 10.1101/gr.140665.112. Epub 2012 Sep 7. Genome Res. 2012. PMID: 22960372 Free PMC article.