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HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery.
Immunity. 2023 Jul 11;56(7):1681-1698.e13. doi: 10.1016/j.immuni.2023.05.009. Epub 2023 Jun 9.
Immunity. 2023.
PMID: 37301199
Factors to be considered in designing frameworks for automated bioinformatics pipelines-a perspective based on application setting.
Hung YM, Lai LC.
Hung YM, et al.
Transl Cancer Res. 2020 Dec;9(12):7382-7383. doi: 10.21037/tcr-20-3168.
Transl Cancer Res. 2020.
PMID: 35117338
Free PMC article.
No abstract available.
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To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequences.
Hung YM, Lyu WN, Tsai ML, Liu CL, Lai LC, Tsai MH, Chuang EY.
Hung YM, et al.
Comput Biol Med. 2022 Jun;145:105416. doi: 10.1016/j.compbiomed.2022.105416. Epub 2022 Mar 17.
Comput Biol Med. 2022.
PMID: 35313206
Free article.
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16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences.
Hsieh YP, Hung YM, Tsai MH, Lai LC, Chuang EY.
Hsieh YP, et al. Among authors: hung ym.
Front Bioinform. 2022 Aug 3;2:905489. doi: 10.3389/fbinf.2022.905489. eCollection 2022.
Front Bioinform. 2022.
PMID: 36304264
Free PMC article.
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EasyMAP: A user-friendly online platform for analyzing 16S ribosomal DNA sequencing data.
Hung YM, Lu TP, Tsai MH, Lai LC, Chuang EY.
Hung YM, et al.
N Biotechnol. 2021 Jul 25;63:37-44. doi: 10.1016/j.nbt.2021.03.001. Epub 2021 Mar 9.
N Biotechnol. 2021.
PMID: 33711505
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NURECON: A Novel Online System for Determining Nutrition Requirements Based on Microbial Composition.
Hu ZQ, Hung YM, Chen LH, Lai LC, Pan MH, Chuang EY, Tsai MH.
Hu ZQ, et al. Among authors: hung ym.
IEEE/ACM Trans Comput Biol Bioinform. 2024 Mar-Apr;21(2):254-264. doi: 10.1109/TCBB.2024.3349572.
IEEE/ACM Trans Comput Biol Bioinform. 2024.
PMID: 38568776
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