Crystal structures of homoserine dehydrogenase suggest a novel catalytic mechanism for oxidoreductases

Nat Struct Biol. 2000 Mar;7(3):238-44. doi: 10.1038/73359.

Abstract

The structure of the antifungal drug target homoserine dehydrogenase (HSD) was determined from Saccharomyces cerevisiae in apo and holo forms, and as a ternary complex with bound products, by X-ray diffraction. The three forms show that the enzyme is a dimer, with each monomer composed of three regions, the nucleotide-binding region, the dimerization region and the catalytic region. The dimerization and catalytic regions have novel folds, whereas the fold of the nucleotide-binding region is a variation on the Rossmann fold. The novel folds impose a novel composition and arrangement of active site residues when compared to all other currently known oxidoreductases. This observation, in conjunction with site-directed mutagenesis of active site residues and steady-state kinetic measurements, suggest that HSD exhibits a new variation on dehydrogenase chemistry.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Apoenzymes / chemistry
  • Apoenzymes / genetics
  • Apoenzymes / metabolism
  • Binding Sites
  • Catalysis
  • Catalytic Domain
  • Cations / metabolism
  • Crystallography, X-Ray
  • Dimerization
  • Holoenzymes / chemistry
  • Holoenzymes / genetics
  • Holoenzymes / metabolism
  • Homoserine / metabolism
  • Homoserine Dehydrogenase / chemistry*
  • Homoserine Dehydrogenase / genetics
  • Homoserine Dehydrogenase / metabolism*
  • Hydrogen / metabolism
  • Metals / metabolism
  • Models, Chemical*
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation / genetics
  • NAD / analogs & derivatives
  • NAD / metabolism
  • Protein Conformation
  • Protein Folding
  • Saccharomyces cerevisiae / enzymology*
  • Saccharomyces cerevisiae / genetics
  • Structure-Activity Relationship

Substances

  • Apoenzymes
  • Cations
  • Holoenzymes
  • Metals
  • NAD
  • Homoserine
  • Hydrogen
  • Homoserine Dehydrogenase

Associated data

  • PDB/1EBF
  • PDB/1EBU