Glycopeptide antibiotic biosynthesis: enzymatic assembly of the dedicated amino acid monomer (S)-3,5-dihydroxyphenylglycine

Proc Natl Acad Sci U S A. 2001 Dec 18;98(26):14901-6. doi: 10.1073/pnas.221582098.

Abstract

Four proteins, DpgA-D, required for the biosynthesis by actinomycetes of the nonproteinogenic amino acid monomer (S)-3,5-dihydroxyphenylglycine (Dpg), that is a crosslinking site in the maturation of vancomycin and teicoplanin antibiotic scaffolds, were expressed in Escherichia coli, purified in soluble form, and assayed for enzymatic activity. DpgA is a type III polyketide synthase, converting four molecules of malonyl-CoA to 3,5-dihydroxyphenylacetyl-CoA (DPA-CoA) and three free coenzyme A (CoASH) products. Almost no turnover was observed for DpgA until DpgB was added, producing a net k(cat) of 1-2 min(-1) at a 3:1 ratio of DpgB:DpgA. Addition of DpgD gave a further 2-fold rate increase. DpgC had the unusual catalytic capacity to convert DPA-CoA to 3,5-dihydroxyphenylglyoxylate, which is a transamination away from Dpg. DpgC performed a net CH(2) to C=O four-electron oxidation on the Calpha of DPA-CoA and hydrolyzed the thioester linkage with a k(cat) of 10 min(-1). Phenylacetyl-CoA was also processed, to phenylglyoxylate, but with about 500-fold lower k(cat)/K(M). DpgC showed no activity in anaerobic incubations, suggesting an oxygenase function, but had no detectable bound organic cofactors or metals. A weak enoyl-CoA hydratase activity was detected for both DpgB and DpgD.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Anti-Bacterial Agents / biosynthesis*
  • Bacterial Proteins*
  • Base Sequence
  • Coenzyme A Ligases / isolation & purification
  • Coenzyme A Ligases / metabolism*
  • DNA Primers
  • Glycine / analogs & derivatives
  • Glycine / chemistry
  • Glycine / metabolism*
  • Glycopeptides*
  • Kinetics
  • Oxidation-Reduction
  • Resorcinols / chemistry
  • Resorcinols / metabolism*

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins
  • DNA Primers
  • DpgA protein, Amycolatopsis mediterranei
  • Glycopeptides
  • Resorcinols
  • 3,5-dihydroxyphenylglycine
  • Coenzyme A Ligases
  • Glycine