Gene sequence and the 1.8 A crystal structure of the tungsten-containing formate dehydrogenase from Desulfovibrio gigas

Structure. 2002 Sep;10(9):1261-72. doi: 10.1016/s0969-2126(02)00826-2.

Abstract

Desulfovibrio gigas formate dehydrogenase is the first representative of a tungsten-containing enzyme from a mesophile that has been structurally characterized. It is a heterodimer of 110 and 24 kDa subunits. The large subunit, homologous to E. coli FDH-H and to D. desulfuricans nitrate reductase, harbors the W site and one [4Fe-4S] center. No small subunit ortholog containing three [4Fe-4S] clusters has been reported. The structural homology with E. coli FDH-H shows that the essential residues (SeCys158, His159, and Arg407) at the active site are conserved. The active site is accessible via a positively charged tunnel, while product release may be facilitated, for H(+) by buried waters and protonable amino acids and for CO(2) through a hydrophobic channel.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Carbon Dioxide / metabolism
  • Crystallography, X-Ray
  • Desulfovibrio / enzymology*
  • Desulfovibrio / genetics
  • Electrons
  • Formate Dehydrogenases / chemistry*
  • Formate Dehydrogenases / genetics
  • Formate Dehydrogenases / metabolism*
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Conformation
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • Protons
  • Sequence Homology, Amino Acid
  • Static Electricity
  • Structure-Activity Relationship
  • Tungsten / metabolism*

Substances

  • Protein Subunits
  • Protons
  • Carbon Dioxide
  • Formate Dehydrogenases
  • Tungsten

Associated data

  • GENBANK/AJ318781
  • GENBANK/AJ427412
  • PDB/P83237