Crystallographic and spectroscopic evidence for high affinity binding of FeEDTA(H2O)- to the periplasmic nickel transporter NikA

J Am Chem Soc. 2005 Jul 20;127(28):10075-82. doi: 10.1021/ja0518530.

Abstract

Because nickel is both essential and toxic to a great variety of organisms, its detection and transport is highly regulated. In Escherichia coli and other related Gram-negative bacteria, high affinity nickel transport depends on proteins expressed by the nik operon. A central actor of this process is the periplasmic NikA transport protein. A previous structural report has proposed that nickel binds to NikA as a pentahydrate species. However, both stereochemical considerations and X-ray absorption spectroscopic results are incompatible with that interpretation. Here, we report the 1.8 A resolution structure of NikA and show that it binds FeEDTA(H2O)- with very high affinity. In addition, we provide crystallographic evidence that a metal-EDTA complex was also bound to the previously reported NikA structure. Our observations strongly suggest that nickel transport in E. coli requires the binding of this metal ion to a metallophore that bears significant resemblance to EDTA. They also provide a basis for the potential use of NikA in the bioremediation of toxic transition metals and the design of artificial metalloenzymes.

MeSH terms

  • ATP-Binding Cassette Transporters / chemistry*
  • ATP-Binding Cassette Transporters / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Edetic Acid / chemistry*
  • Edetic Acid / metabolism
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / metabolism
  • Ferrous Compounds / chemistry*
  • Ferrous Compounds / metabolism
  • Iron / chemistry*
  • Iron / metabolism
  • Mass Spectrometry
  • Nickel / chemistry*
  • Nickel / metabolism
  • Periplasm / chemistry
  • Protein Structure, Tertiary

Substances

  • ATP-Binding Cassette Transporters
  • Escherichia coli Proteins
  • Ferrous Compounds
  • nikA protein, E coli
  • Fe(II)-EDTA
  • Nickel
  • Edetic Acid
  • Iron