Identification of a long-range protein network that modulates active site dynamics in extremophilic alcohol dehydrogenases

J Biol Chem. 2013 May 17;288(20):14087-14097. doi: 10.1074/jbc.M113.453951. Epub 2013 Mar 22.

Abstract

A tetrameric thermophilic alcohol dehydrogenase from Bacillus stearothermophilus (ht-ADH) has been mutated at an aromatic side chain in the active site (Trp-87). The ht-W87A mutation results in a loss of the Arrhenius break seen at 30 °C for the wild-type enzyme and an increase in cold lability that is attributed to destabilization of the active tetrameric form. Kinetic isotope effects (KIEs) are nearly temperature-independent over the experimental temperature range, and similar in magnitude to those measured above 30 °C for the wild-type enzyme. This suggests that the rigidification in the wild-type enzyme below 30 °C does not occur for ht-W87A. A mutation at the dimer-dimer interface in a thermolabile psychrophilic homologue of ht-ADH, ps-A25Y, leads to a more thermostable enzyme and a change in the rate-determining step at low temperature. The reciprocal mutation in ht-ADH, ht-Y25A, results in kinetic behavior similar to that of W87A. Collectively, the results indicate that flexibility at the active site is intimately connected to a subunit interaction 20 Å away. The convex Arrhenius curves previously reported for ht-ADH (Kohen, A., Cannio, R., Bartolucci, S., and Klinman, J. P. (1999) Nature 399, 496-499) are proposed to arise, at least in part, from a change in subunit interactions that rigidifies the substrate-binding domain below 30 °C, and impedes the ability of the enzyme to sample the catalytically relevant conformational landscape. These results implicate an evolutionarily conserved, long-range network of dynamical communication that controls C-H activation in the prokaryotic alcohol dehydrogenases.

Keywords: Alcohol Dehydrogenase; Conformational Sampling; Convex Arrhenius Curves; Corresponding State Hypothesis; Enzyme Catalysis; Extremophiles; Hydrogen Tunneling; Isotope Effects; Mutagenesis; Protein Dynamics.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alcohol Dehydrogenase / chemistry*
  • Alcohol Dehydrogenase / genetics
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Catalysis
  • Catalytic Domain
  • Circular Dichroism
  • Cloning, Molecular
  • Cold Temperature
  • Geobacillus stearothermophilus / enzymology*
  • Geobacillus stearothermophilus / genetics
  • Hydrogen / chemistry
  • Mutagenesis
  • Mutation*
  • Protein Binding*
  • Protein Conformation
  • Spectrophotometry

Substances

  • Bacterial Proteins
  • Hydrogen
  • Alcohol Dehydrogenase