Genome mining of the hitachimycin biosynthetic gene cluster: involvement of a phenylalanine-2,3-aminomutase in biosynthesis

Chembiochem. 2015 Apr 13;16(6):909-14. doi: 10.1002/cbic.201500040. Epub 2015 Mar 18.

Abstract

Hitachimycin is a macrolactam antibiotic with (S)-β-phenylalanine (β-Phe) at the starter position of its polyketide skeleton. To understand the incorporation mechanism of β-Phe and the modification mechanism of the unique polyketide skeleton, the biosynthetic gene cluster for hitachimycin in Streptomyces scabrisporus was identified by genome mining. The identified gene cluster contains a putative phenylalanine-2,3-aminomutase (PAM), five polyketide synthases, four β-amino-acid-carrying enzymes, and a characteristic amidohydrolase. A hitA knockout mutant showed no hitachimycin production, but antibiotic production was restored by feeding with (S)-β-Phe. We also confirmed the enzymatic activity of the HitA PAM. The results suggest that the identified gene cluster is responsible for the biosynthesis of hitachimycin. A plausible biosynthetic pathway for hitachimycin, including a unique polyketide skeletal transformation mechanism, is proposed.

Keywords: antibiotics; biosynthesis; genome mining; hitachimycin; macrolactam polyketide; phenylalanine-2,3-aminomutase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Genome, Bacterial / genetics
  • Genomics*
  • Intramolecular Transferases / genetics*
  • Intramolecular Transferases / metabolism*
  • Multigene Family*
  • Phenylalanine / metabolism*
  • Polyenes / chemistry
  • Polyenes / metabolism
  • Stereoisomerism
  • Streptomyces / enzymology
  • Streptomyces / genetics
  • Streptomyces / metabolism

Substances

  • Polyenes
  • Phenylalanine
  • stubomycin
  • Intramolecular Transferases