Mechanism-Based Trapping of the Quinonoid Intermediate by Using the K276R Mutant of PLP-Dependent 3-Aminobenzoate Synthase PctV in the Biosynthesis of Pactamycin

Chembiochem. 2015 Nov;16(17):2484-90. doi: 10.1002/cbic.201500426. Epub 2015 Oct 23.

Abstract

Mutational analysis of the pyridoxal 5'-phosphate (PLP)-dependent enzyme PctV was carried out to elucidate the multi-step reaction mechanism for the formation of 3-aminobenzoate (3-ABA) from 3-dehydroshikimate (3-DSA). Introduction of mutation K276R led to the accumulation of a quinonoid intermediate with an absorption maximum at 580 nm after the reaction of pyridoxamine 5'-phosphate (PMP) with 3-DSA. The chemical structure of this intermediate was supported by X-ray crystallographic analysis of the complex formed between the K276R mutant and the quinonoid intermediate. These results clearly show that a quinonoid intermediate is involved in the formation of 3-ABA. They also indicate that Lys276 (in the active site of PctV) plays multiple roles, including acid/base catalysis during the dehydration reaction of the quinonoid intermediate.

Keywords: PLP-dependent enzymes; biosynthesis; natural products; pactamycin; quinonoid.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Biocatalysis
  • Catalytic Domain
  • Crystallography, X-Ray
  • Kinetics
  • Molecular Dynamics Simulation
  • Mutagenesis, Site-Directed
  • Oxidoreductases / chemistry
  • Oxidoreductases / genetics
  • Oxidoreductases / metabolism*
  • Pactamycin / biosynthesis*
  • Pactamycin / chemistry
  • Pyridoxal Phosphate / chemistry
  • Shikimic Acid / analogs & derivatives
  • Shikimic Acid / chemistry
  • Shikimic Acid / metabolism
  • Spectrophotometry, Ultraviolet
  • meta-Aminobenzoates / chemistry
  • meta-Aminobenzoates / metabolism

Substances

  • meta-Aminobenzoates
  • Pactamycin
  • 3-dehydroshikimate
  • Shikimic Acid
  • Pyridoxal Phosphate
  • Oxidoreductases
  • benzoate synthase
  • 3-aminobenzoic acid