Tryptophan Synthase Uses an Atypical Mechanism To Achieve Substrate Specificity

Biochemistry. 2016 Dec 27;55(51):7043-7046. doi: 10.1021/acs.biochem.6b01127. Epub 2016 Dec 13.

Abstract

Tryptophan synthase (TrpS) catalyzes the final steps in the biosynthesis of l-tryptophan from l-serine (Ser) and indole-3-glycerol phosphate (IGP). We report that native TrpS can also catalyze a productive reaction with l-threonine (Thr), leading to (2S,3S)-β-methyltryptophan. Surprisingly, β-substitution occurs in vitro with a 3.4-fold higher catalytic efficiency for Ser over Thr using saturating indole, despite a >82000-fold preference for Ser in direct competition using IGP. Structural data identify a novel product binding site, and kinetic experiments clarify the atypical mechanism of specificity: Thr binds efficiently but decreases the affinity for indole and disrupts the allosteric signaling that regulates the catalytic cycle.

MeSH terms

  • Allosteric Regulation
  • Archaeal Proteins / chemistry
  • Archaeal Proteins / metabolism*
  • Binding Sites
  • Biocatalysis
  • Biosynthetic Pathways*
  • Crystallography, X-Ray
  • Glycerophosphates / chemistry
  • Glycerophosphates / metabolism*
  • Indoles / chemistry
  • Indoles / metabolism
  • Kinetics
  • Models, Molecular
  • Molecular Structure
  • Protein Binding
  • Protein Domains
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • Pyrococcus furiosus / enzymology
  • Serine / chemistry
  • Serine / metabolism*
  • Spectrophotometry
  • Substrate Specificity
  • Threonine / chemistry
  • Threonine / metabolism
  • Tryptophan / analogs & derivatives
  • Tryptophan / biosynthesis*
  • Tryptophan / chemistry
  • Tryptophan / genetics
  • Tryptophan / metabolism
  • Tryptophan Synthase / chemistry
  • Tryptophan Synthase / metabolism*

Substances

  • Archaeal Proteins
  • Glycerophosphates
  • Indoles
  • Protein Subunits
  • beta-methyltryptophan
  • Threonine
  • indoleglycerol phosphate
  • Serine
  • indole
  • Tryptophan
  • Tryptophan Synthase