A marine oligobacterium harboring genes known to be part of aromatic hydrocarbon degradation pathways of soil pseudomonads

Appl Environ Microbiol. 1996 Jun;62(6):2169-73. doi: 10.1128/aem.62.6.2169-2173.1996.

Abstract

The far-ranging distribution of genes for aromatic hydrocarbon catabolism, predominantly studied in soil pseudomonads, is extended to a marine oligobacterium by finding five homologous sequences in a 5.7-kb chromosomal DNA from a new isolate, Cycloclasticus oligotrophus RB1. RB1 is capable of growth in unamended seawater or mineral salts media supplemented with a variety of aromatic compounds, including toluene, o-, m-, or p-xylenes, as sole carbon sources. The five open reading frames, designated xylM, K, G, C1, and C2, are 57% A+T-rich. XylM is predicted to be an integral membrane protein; XylK and XylG possess glutathione S-transferase (GST) and 2-hydroxy-5methyl-6-oxohexa2,4-dienoate dehydrogenase activities, respectively; XylC1C2 are homologs of the large and small subunits of the iron sulfur protein component of the biphenyl dioxygenase (e.g., BphA1A2).

MeSH terms

  • Amino Acid Sequence
  • Bacteria / classification
  • Bacteria / genetics*
  • Bacteria / metabolism*
  • Base Sequence
  • Biodegradation, Environmental
  • Codon / genetics
  • DNA, Bacterial / genetics
  • Genes, Bacterial*
  • Hydrocarbons / metabolism*
  • Molecular Sequence Data
  • Open Reading Frames
  • Pseudomonas / genetics
  • Pseudomonas / metabolism
  • Restriction Mapping
  • Seawater / microbiology*
  • Soil Microbiology

Substances

  • Codon
  • DNA, Bacterial
  • Hydrocarbons

Associated data

  • GENBANK/U51165