WWW access to the SYSTERS protein sequence cluster set

A Krause; P Nicodème; E Bornberg-Bauer; M Rehmsmeier; M Vingron

doi:10.1093/bioinformatics/15.3.262

WWW access to the SYSTERS protein sequence cluster set

Bioinformatics. 1999 Mar;15(3):262-3. doi: 10.1093/bioinformatics/15.3.262.

Authors

A Krause¹, P Nicodème, E Bornberg-Bauer, M Rehmsmeier, M Vingron

Affiliation

¹ Deutsches Krebsforschungszentrum, Theoretische Bioinformatik, INF 280, D-69120 Heidelberg, Germany. A.Krause@DKFZ-Heidelberg.de

PMID: 10222416
DOI: 10.1093/bioinformatics/15.3.262

Abstract

Summary: We present a Web server where the SYSTERS cluster set of the non-redundant protein database consisting of sequences from SWISS-PROT and PIR is being made available for querying and browsing. The cluster set can be searched with a new sequence using the SSMAL search tool. Additionally, a multiple alignment is generated for each cluster and annotated with domain information from the Pfam protein family database.

Availability: The server address is http://www.dkfz-heidelberg.de/tbi/services/cluster/ systersform

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Algorithms
Amino Acid Sequence
Animals
Databases, Factual*
Humans
Internet*
Molecular Sequence Data
Proteins / genetics*
Sequence Alignment
Sequence Homology, Amino Acid

Substances

Proteins