Haloalkane dehalogenases: steady-state kinetics and halide inhibition

Biochemistry. 1999 May 4;38(18):5772-8. doi: 10.1021/bi982853y.

Abstract

The substrate specificities and product inhibition patterns of haloalkane dehalogenases from Xanthobacter autotrophicus GJ10 (XaDHL) and Rhodococcus rhodochrous (RrDHL) have been compared using a pH-indicator dye assay. In contrast to XaDHL, RrDHL is efficient toward secondary alkyl halides. Using steady-state kinetics, we have shown that halides are uncompetitive inhibitors of XaDHL with 1, 2-dichloroethane as the varied substrate at pH 8.2 (Cl-, Kii = 19 +/- 0.91; Br-, Kii = 2.5 +/- 0.19 mM; I-, Kii = 4.1 +/- 0.43 mM). Because they are uncompetitive with the substrate, halide ions do not bind to the free form of the enzyme; therefore, halide ions cannot be the last product released from the enzyme. The Kii for chloride was pH dependent and decreased more than 20-fold from 61 mM at pH 8.9 to 2.9 mM at pH 6.5. The pH dependence of 1/Kii showed simple titration behavior that fit to a pKa of approximately 7.5. The kcat was maximal at pH 8.2 and decreased at lower pH. A titration of kcat versus pH also fits to a pKa of approximately 7.5. Taken together, these data suggest that chloride binding and kcat are affected by the same ionizable group, likely the imidazole of a histidyl residue. In contrast, halides do not inhibit RrDHL. The Rhodococcus enzyme does not contain a tryptophan corresponding to W175 of XaDHL, which has been implicated in halide ion binding. The site-directed mutants W175F and W175Y of XaDHL were prepared and tested for halide ion inhibition. Halides do not inhibit either W175F or W175Y XaDHL.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Binding, Competitive
  • Chlorides / chemistry*
  • Chlorides / pharmacology
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology
  • Ethylene Chlorohydrin / chemistry
  • Ethylene Chlorohydrin / pharmacology
  • Gram-Negative Aerobic Bacteria / enzymology
  • Hydrogen-Ion Concentration
  • Hydrolases / antagonists & inhibitors*
  • Hydrolases / chemistry*
  • Indicators and Reagents
  • Kinetics
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Nitrophenols
  • Phenolsulfonphthalein / analogs & derivatives
  • Phenylalanine / genetics
  • Rhodococcus / enzymology
  • Substrate Specificity
  • Tryptophan / genetics
  • Tyrosine / genetics

Substances

  • Chlorides
  • Enzyme Inhibitors
  • Indicators and Reagents
  • Nitrophenols
  • Tyrosine
  • Phenylalanine
  • Ethylene Chlorohydrin
  • 3-cresol purple
  • Tryptophan
  • Hydrolases
  • haloalkane dehalogenase
  • Phenolsulfonphthalein
  • 3-nitrophenol