Tryptophan rotamer distributions in amphipathic peptides at a lipid surface

Biophys J. 1999 Jun;76(6):3235-42. doi: 10.1016/S0006-3495(99)77475-8.

Abstract

The fluorescence decay of tryptophan is a sensitive indicator of its local environment within a peptide or protein. We describe the use of frequency domain fluorescence spectroscopy to determine the conformational and environmental changes associated with the interaction of single tryptophan amphipathic peptides with a phospholipid surface. The five 18-residue peptides studied are based on a class A amphipathic peptide known to associate with lipid bilayers. The peptides contain a single tryptophan located at positions 2, 3, 7, 12, or 14 in the sequence. In aqueous solution, the peptides are unstructured and a triple-exponential function is required to fit the decay data. Association of the peptides with small unilamellar vesicles composed of egg phosphatidylcholine reduces the complexity of the fluorescence decays to a double exponential function, with a reduced dependence of the preexponential amplitude on peptide sequence. The data are interpreted in terms of a rotamer model in which the modality and relative proportions of the lifetime components are related to the population distribution of tryptophan chi1 rotamers about the Calpha-Cbeta bond. Peptide secondary structure and the disposition of the tryptophan residue relative to the lipid and aqueous phases in the peptide-lipid complex affect the local environment of tryptophan and influence the distribution of side-chain rotamers. The results show that measurement of the temporal decay of tryptophan emission provides a useful adjunct to other biophysical techniques for investigating peptide-lipid and protein-membrane interactions.

MeSH terms

  • Amino Acid Sequence
  • Biophysical Phenomena
  • Biophysics
  • Lipid Bilayers / chemistry*
  • Molecular Sequence Data
  • Peptides / chemistry*
  • Phospholipids / chemistry
  • Spectrometry, Fluorescence
  • Surface Properties
  • Tryptophan / chemistry*
  • Water

Substances

  • Lipid Bilayers
  • Peptides
  • Phospholipids
  • Water
  • Tryptophan