Mutational analysis of a conserved tetraloop in the 5' untranslated region of hepatitis C virus identifies a novel RNA element essential for the internal ribosome entry site function

FEBS Lett. 1999 Jun 18;453(1-2):49-53. doi: 10.1016/s0014-5793(99)00662-6.

Abstract

The 5' untranslated region of hepatitis C virus RNA forms an extensive secondary structure including several hairpin motifs and mediates translation initiation by an internal ribosome entry site-dependent pathway. We report, here, an extensive mutagenesis analysis of a highly conserved tetraloop in the 5' untranslated region of hepatitis C virus, namely hairpin IIIe (295'-GAUA-298'). Our results demonstrate that hairpin IIIe is essential for the internal ribosome entry site function. Moreover, they indicate the importance of the primary structure of this motif because mutations in all four nucleotides of the loop caused a severe loss of internal ribosome entry site activity. These data represent the first experimental evidence for the functional significance of tetraloops in internal ribosome entry site-driven translation of hepatitis C virus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / chemistry
  • 5' Untranslated Regions / genetics*
  • Base Sequence
  • Conserved Sequence*
  • DNA Mutational Analysis
  • Hepacivirus / genetics*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Protein Biosynthesis*
  • RNA, Viral / chemistry
  • RNA, Viral / genetics*
  • Ribosomes / metabolism

Substances

  • 5' Untranslated Regions
  • RNA, Viral