Host-dependent requirement for specific DnaA boxes for plasmid RK2 replication

Mol Microbiol. 1999 Aug;33(3):490-8. doi: 10.1046/j.1365-2958.1999.01491.x.


The replication origin of the broad-host-range plasmid RK2, oriV, contains four DnaA boxes, which bind the DnaA protein isolated from Escherichia coli. Using a transformation assay, mutational analysis of these boxes showed a differential requirement for replication in different Gram-negative bacteria. DnaA boxes 3 and 4 were required in E. coli and Pseudomonas putidabut not as strictly in Azotobacter vinelandii and not at all in P. aeruginosa. In vitro replication results using an extract prepared from E. coli demonstrated that the activity of origin derivatives containing mutations in boxes 3 or 4 or a deletion of all four DnaA boxes could be restored by the addition of increasing amounts of purified DnaA protein. High levels of DnaA protein in the presence of the TrfA protein also resulted in the stimulation of open complex formation and DnaB helicase loading on oriV, even in the absence of the four DnaA boxes. These observations at least raise the possibility that an alternative mechanism of initiation of oriV is being used in the absence of the four DnaA boxes and that this mechanism may be similar to that used in P. aeruginosa, which does not require these four DnaA boxes for replication.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacterial Proteins / metabolism
  • DNA Helicases / genetics
  • DNA Replication / genetics*
  • DNA, Bacterial / genetics
  • DNA-Binding Proteins / metabolism
  • Enzyme Activation / genetics
  • Escherichia coli / genetics*
  • Escherichia coli Proteins*
  • Mutation
  • Plasmids / genetics*
  • Regulatory Sequences, Nucleic Acid / genetics
  • Replication Origin / genetics


  • Bacterial Proteins
  • DNA, Bacterial
  • DNA-Binding Proteins
  • DnaA protein, Bacteria
  • Escherichia coli Proteins
  • TrfA protein, E coli
  • DNA Helicases