Development of an oligonucleotide probe specific for Trichophyton rubrum

Br J Dermatol. 1999 Aug;141(2):240-5. doi: 10.1046/j.1365-2133.1999.02971.x.

Abstract

A species-specific DNA probe was developed to detect the dermatophyte species Trichophyton rubrum. The selected oligonucleotide sequence is derived from the highly variable internal transcribed spacer 2 region of the ribosomal DNA operon. The specificity of the non-radioactive labelled oligonucleotide probe was tested against related dermatophytes, other eukaryotic microorganisms and against human DNA. No cross-hybridization was found, and hybridization signals were invariably detected in all T. rubrum strains investigated. In addition, no homologous sequences were found searching the EMBL database. Experiments to establish a method for isolating DNA directly from clinical specimens gave successful amplification and hybridization products in about 30% of the samples.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA Probes / genetics
  • Genome, Fungal
  • Humans
  • Molecular Sequence Data
  • Oligonucleotide Probes / genetics*
  • Polymerase Chain Reaction / methods
  • Sensitivity and Specificity
  • Tinea / classification
  • Tinea / diagnosis*
  • Trichophyton / genetics

Substances

  • DNA Probes
  • Oligonucleotide Probes