A minimal RNA polymerase III transcription system

EMBO J. 1999 Sep 15;18(18):5042-51. doi: 10.1093/emboj/18.18.5042.

Abstract

Transcription factor (TF) IIIB recruits RNA polymerase (pol) III for specific initiation of transcription. All three subunits of TFIIIB, TBP, Brf (the TFIIB-related subunit) and B", are required for transcription of supercoiled and linear duplex DNA, but we show here that B" is non-essential on a promoter that has been partly pre-opened by unpairing a short segment of the transcription bubble. These findings expose a striking similarity between transcriptional initiation by pol II, pol III and bacterial RNA polymerases: a preformed single-stranded DNA bubble upstream of the transcriptional start removes the dependence of pol II on TFIIE, TFIIH and ATP hydrolysis, and the dependence of pol III on B"; the favored placement of the transcription bubble for B"-independent transcription by pol III overlaps a DNA segment that interacts sequence specifically as single-stranded DNA with the sigma(70 )initiation subunit of Escherichia coli RNA polymerase holoenzyme.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Base Sequence
  • DNA, Fungal / genetics
  • DNA, Fungal / metabolism
  • DNA-Directed RNA Polymerases / metabolism
  • Escherichia coli / enzymology
  • Holoenzymes / chemistry
  • Holoenzymes / metabolism
  • Molecular Sequence Data
  • Promoter Regions, Genetic
  • Protein Structure, Quaternary
  • RNA Polymerase III / metabolism*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins
  • Sigma Factor / metabolism
  • Transcription Factor TFIIIB
  • Transcription Factors / chemistry
  • Transcription Factors / metabolism
  • Transcription, Genetic

Substances

  • BRF1 protein, S cerevisiae
  • DNA, Fungal
  • Holoenzymes
  • Saccharomyces cerevisiae Proteins
  • Sigma Factor
  • Transcription Factor TFIIIB
  • Transcription Factors
  • Adenosine Triphosphate
  • RNA polymerase sigma 70
  • DNA-Directed RNA Polymerases
  • RNA Polymerase III