XynX, a possible exo-xylanase of Aeromonas caviae ME-1 that produces exclusively xylobiose and xylotetraose from xylan

Biosci Biotechnol Biochem. 1999 Aug;63(8):1346-52. doi: 10.1271/bbb.63.1346.

Abstract

A gene, xynX, encoding a novel xylanase, was cloned from Aeromonas caviae ME-1. This gene encoded an enzyme that was constituted of 334 amino acid residues (38,580 Da) and was similar in sequence to Family 10 (Family F) beta-1,4 endo-xylanases. XynX produced only xylobiose and xylotetraose from birch wood xylan, and xylotriose, xylopentaose, and higher oligosaccharides were not detected in the TLC analysis. We designated it as X2/X4-forming xylanase. This enzyme does not have transglycosylation activity. These data suggested that this enzyme is a possible exo-xylanase. According to homology modeling, the enzyme has a ring-shaped (alpha/beta)8 barrel (TIM barrel) structure, typical of Family 10 endo-xylanases, with the extraordinary feature of a longer bottom-loop structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aeromonas / enzymology
  • Aeromonas / genetics*
  • Amino Acid Sequence
  • Base Sequence
  • Disaccharides / biosynthesis*
  • Genes, Bacterial*
  • Genetic Code
  • Models, Molecular
  • Molecular Sequence Data
  • Sequence Homology, Amino Acid
  • Xylan Endo-1,3-beta-Xylosidase
  • Xylans / biosynthesis*
  • Xylans / metabolism*
  • Xylosidases / genetics*

Substances

  • Disaccharides
  • Xylans
  • Xylosidases
  • Xylan Endo-1,3-beta-Xylosidase
  • xylobiose