Pseudomonas aeruginosa contains a novel type V porphobilinogen synthase with no required catalytic metal ions

Biochemistry. 1999 Oct 19;38(42):13976-82. doi: 10.1021/bi9906470.

Abstract

Porphobilinogen synthases (PBGS) are metalloenzymes that catalyze the first common step in tetrapyrrole biosynthesis. The PBGS enzymes have previously been categorized into four types (I-IV) by the number of Zn(2+) and/or Mg(2+) utilized at three different metal binding sites termed A, B, and C. In this study Pseudomonas aeruginosa PBGS is found to bind only four Mg(2+) per octamer as determined by atomic absorption spectroscopy, in the presence or absence of substrate/product. This is the lowest number of bound metal ions yet found for PBGS where other enzymes bind 8-16 divalent ions. These four Mg(2+) allosterically stimulate a metal ion independent catalytic activity, in a fashion dependent upon both pH and K(+). The allosteric Mg(2+) of PBGS is located in metal binding site C, which is outside the active site. No evidence is found for metal binding to the potential high-affinity active site metal binding sites A and/or B. P. aeruginosa PBGS was investigated using Mn(2+) as an EPR probe for Mg(2+), and the active site was investigated using [3,5-(13)C]porphobilinogen as an NMR probe. The magnetic resonance data exclude the direct involvement of Mg(2+) in substrate binding and product formation. The combined data suggest that P. aeruginosa PBGS represents a new type V enzyme. Type V PBGS has the remarkable ability to synthesize porphobilinogen in a metal ion independent fashion. The total metal ion stoichiometry of only 4 per octamer suggests half-sites reactivity.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Allosteric Regulation
  • Amino Acid Sequence
  • Binding Sites
  • Carbon Isotopes
  • Catalysis
  • Electron Spin Resonance Spectroscopy
  • Kinetics
  • Magnesium / chemistry
  • Magnesium / metabolism
  • Manganese / chemistry
  • Manganese / metabolism
  • Metals / chemistry
  • Metals / metabolism*
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Porphobilinogen Synthase / chemistry
  • Porphobilinogen Synthase / metabolism*
  • Protein Binding
  • Pseudomonas aeruginosa / enzymology*
  • Spectrophotometry, Atomic

Substances

  • Carbon Isotopes
  • Metals
  • Manganese
  • Porphobilinogen Synthase
  • Magnesium