Molecular characterization of human group C rotavirus genes 6, 7 and 9

J Gen Virol. 1999 Dec:80 ( Pt 12):3181-3187. doi: 10.1099/0022-1317-80-12-3181.

Abstract

Genes 6, 7 and 9 of human group C rotavirus 'Bristol' strain, encoding non-structural proteins (NSP) 3, 1 and 2, respectively, were cloned and sequenced. Human group C rotavirus genome segment 6 is 1350 bp and contains a single ORF of 1231 nucleotides (encoding 402 amino acids). Genome segment 7 is 1270 bp and encodes a protein of 394 amino acids and genome segment 9 is 1037 bp and encodes a 312 amino acid protein. The human group C rotavirus genes 6, 7 and 9 showed 78, 67 and 88% sequence identity, respectively, to the corresponding porcine group C rotavirus genes. The derived protein sequences were compared with those of the porcine 'Cowden' group C and mammalian group A rotavirus strains. The human group C rotavirus NSP1 protein sequence is one amino acid longer than the porcine group C equivalent. In common with group A and porcine group C rotaviruses, the human group C rotavirus NSP1 protein has a zinc finger motif. Human group C rotavirus NSP2 has two hydrophobic heptad repeat regions, a basic, RNA-binding domain and a basic, proline-rich region. Human group C rotavirus NSP3 has both single- and double-stranded RNA-binding domains and several hydrophobic heptad repeat regions, one of which forms a leucine zipper. This work completes the molecular characterization of the non-structural proteins of a human group C rotavirus. Phylogenetic analysis of all the non-structural genes of group A, B and C rotaviruses suggests that these viruses have diverged at a constant rate from a common ancestor.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • DNA, Complementary / genetics
  • Humans
  • Molecular Sequence Data
  • Phylogeny
  • RNA-Binding Proteins / chemistry
  • RNA-Binding Proteins / genetics*
  • Rotavirus / genetics*
  • Rotavirus / metabolism
  • Rotavirus Infections / virology*
  • Sequence Analysis, DNA
  • Viral Nonstructural Proteins / chemistry
  • Viral Nonstructural Proteins / genetics*

Substances

  • DNA, Complementary
  • NSP3 protein, Rotavirus
  • RNA-Binding Proteins
  • Viral Nonstructural Proteins
  • nsp1 protein, Rotavirus
  • NS35 protein, rotavirus

Associated data

  • GENBANK/AJ132203
  • GENBANK/AJ132204
  • GENBANK/AJ132205