ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

Nucleic Acids Res. 2000 Jan 1;28(1):267-9. doi: 10.1093/nar/28.1.267.


ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www. ). ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse. ). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families, domain arrangements of sub-families and links to Pfam-A.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computer Graphics
  • Databases, Factual*
  • Genome*
  • Proteins / chemistry
  • Proteins / genetics*


  • Proteins