Asymptotic power of likelihood-ratio tests for detecting quantitative trait loci using the COGA data

Genet Epidemiol. 1999:17 Suppl 1:S397-402. doi: 10.1002/gepi.1370170767.

Abstract

We investigated the asymptotic power of the likelihood-ratio test for detecting linkage to a quantitative trait locus (QTL) using the data set from the Collaborative Study on the Genetics of Alcoholism (COGA). Assuming a total trait heritability of 50% as determined for the COGA Cz P300 phenotype, we determined the minimum QTL heritability required at each point in the genome to achieve 80% power to detect linkage with a lod of 3.0. We find that there are regions of the genome where it is not possible to detect a QTL of any effect with 80% power, and that the overall minimum detectable QTL heritability for the COGA data is 0.35-0.40.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alcoholism / genetics*
  • Alcoholism / physiopathology
  • Chi-Square Distribution
  • Chromosomes, Human, Pair 4
  • Chromosomes, Human, Pair 6
  • Event-Related Potentials, P300
  • Genetic Linkage
  • Genetic Markers
  • Genetic Testing
  • Humans
  • Likelihood Functions*
  • Lod Score
  • Quantitative Trait, Heritable*

Substances

  • Genetic Markers