Molecular phylogenetic studies of Brassica, rorippa, arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA

Mol Phylogenet Evol. 1999 Dec;13(3):455-62. doi: 10.1006/mpev.1999.0648.


The phylogenetic relationships of nine genera in four tribes of the family Brassicaceae were estimated from the sequences of the internal transcribed spacer region (ITS) of the 18S-25S nuclear ribosomal DNA. The entire ITS region of 16 accessions belonging to 10 species of seven genera was sequenced. Eight published sequences of Brassicaceae were also used. A total of 27 sequences were included in this study; four of them were found to be pseudogenes. Both the neighbor-joining and the parsimony trees suggest that the nine genera can be divided into three groups: (1) Arabidopsis, Cardaminopsis, Capsella, and Lepidium; (2) Rorippa and Cardamine; and (3) Brassica, Sinapis, and Raphanus. In contradiction to the proposal that Cardaminopsis and Arabidopsis be put into an expanded tribe Arabideae, our data show that these two genera are more closely related to Capsella and Lepidium (tribe Lepidieae) than to Rorippa and Cardamine (tribe Arabideae). Further, our data show that within the tribe Brassiceae, Raphanus is more closely related to B. nigra than to the B. oleracea/B. rapa clade. This result is in agreement with the nuclear data obtained in several studies, but is in conflict with the RFLP data of mitochondrial and chloroplast DNA. As pointed out by previous authors, it is possible that Raphanus is a hybrid between the B. nigra and B. oleracea/B. rapa lineages with the latter as the maternal parent.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis / physiology
  • Base Sequence
  • Brassica / genetics
  • Brassica / physiology
  • Brassicaceae / genetics*
  • Brassicaceae / physiology
  • Conserved Sequence
  • DNA, Plant / genetics*
  • DNA, Ribosomal / genetics*
  • Molecular Sequence Data
  • Phylogeny*
  • Pseudogenes
  • RNA, Ribosomal / genetics
  • RNA, Ribosomal, 18S / genetics*
  • Sequence Alignment


  • DNA, Plant
  • DNA, Ribosomal
  • RNA, Ribosomal
  • RNA, Ribosomal, 18S
  • RNA, ribosomal, 25S

Associated data

  • GENBANK/AF128093
  • GENBANK/AF128094
  • GENBANK/AF128095
  • GENBANK/AF128096
  • GENBANK/AF128097
  • GENBANK/AF128098
  • GENBANK/AF128099
  • GENBANK/AF128100
  • GENBANK/AF128101
  • GENBANK/AF128102
  • GENBANK/AF128103
  • GENBANK/AF128104
  • GENBANK/AF128105
  • GENBANK/AF128106
  • GENBANK/AF128107
  • GENBANK/AF128108
  • GENBANK/AF128109
  • GENBANK/AF128110
  • GENBANK/AF128111