The '30K' superfamily of viral movement proteins

J Gen Virol. 2000 Jan;81(Pt 1):257-66. doi: 10.1099/0022-1317-81-1-257.

Abstract

Relationships among the amino acid sequences of viral movement proteins related to the 30 kDa ('30K') movement protein of tobacco mosaic virus - the 30K superfamily - were explored. Sequences were grouped into 18 families. A comparison of secondary structure predictions for each family revealed a common predicted core structure flanked by variable N- and C-terminal domains. The core consisted of a series of beta-elements flanked by an alpha-helix on each end. Consensus sequences for each of the families were generated and aligned with one another. From this alignment an overall secondary structure prediction was generated and a consensus sequence that can recognize each family in database searches was obtained. The analysis led to criteria that were used to evaluate other virus-encoded proteins for possible membership of the 30K superfamily. A rhabdoviral and a tenuiviral protein were identified as 30K superfamily members, as were plant-encoded phloem proteins. Parsimony analysis grouped tubule-forming movement proteins separate from others. Establishment of the alignment of residues of diverse families facilitates comparison of mutagenesis experiments done on different movement proteins and should serve as a guide for further such experiments.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Molecular Sequence Data
  • Phylogeny
  • Plant Proteins / chemistry
  • Plant Proteins / genetics
  • Plant Viral Movement Proteins
  • Plant Viruses / chemistry*
  • Plant Viruses / genetics
  • Plant Viruses / physiology
  • Protein Structure, Secondary
  • RNA Viruses / chemistry*
  • RNA Viruses / genetics
  • RNA Viruses / physiology
  • Sequence Alignment
  • Tobacco Mosaic Virus / chemistry*
  • Tobacco Mosaic Virus / genetics
  • Tobacco Mosaic Virus / physiology
  • Viral Proteins* / chemistry*
  • Viral Proteins* / classification
  • Viral Proteins* / genetics

Substances

  • Plant Proteins
  • Plant Viral Movement Proteins
  • Viral Proteins